Experiment: Post-colonization (Day 14) - Cage7;Mouse3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0037 and BT0038 are separated by 123 nucleotides BT0038 and BT0039 are separated by 285 nucleotides BT0039 and BT0040 are separated by 60 nucleotides
BT0037: BT0037 - putative transcriptional regulatory protein (NCBI ptt file), at 34,087 to 35,142
BT0037
BT0038: BT0038 - hypothetical protein (NCBI ptt file), at 35,266 to 35,703
BT0038
BT0039: BT0039 - conserved hypothetical protein (NCBI ptt file), at 35,989 to 36,417
BT0039
BT0040: BT0040 - hypothetical protein (NCBI ptt file), at 36,478 to 38,019
BT0040
Position (kb) 35
36 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 34.278 kb on + strand, within BT0037 at 34.279 kb on - strand, within BT0037 at 34.296 kb on + strand, within BT0037 at 34.305 kb on + strand, within BT0037 at 34.306 kb on - strand, within BT0037 at 34.428 kb on - strand, within BT0037 at 34.547 kb on - strand, within BT0037 at 34.549 kb on + strand, within BT0037 at 34.568 kb on + strand, within BT0037 at 34.579 kb on - strand, within BT0037 at 34.682 kb on + strand, within BT0037 at 34.684 kb on + strand, within BT0037 at 34.684 kb on + strand, within BT0037 at 34.684 kb on + strand, within BT0037 at 34.793 kb on + strand, within BT0037 at 34.962 kb on + strand, within BT0037 at 34.970 kb on - strand, within BT0037 at 35.006 kb on + strand, within BT0037 at 35.007 kb on - strand, within BT0037 at 35.009 kb on + strand, within BT0037 at 35.009 kb on + strand, within BT0037 at 35.010 kb on - strand, within BT0037 at 35.046 kb on - strand at 35.061 kb on - strand at 35.141 kb on - strand at 35.152 kb on - strand at 35.153 kb on + strand at 35.166 kb on - strand at 35.232 kb on + strand at 35.290 kb on - strand at 35.296 kb on - strand at 35.344 kb on - strand, within BT0038 at 35.402 kb on + strand, within BT0038 at 35.402 kb on + strand, within BT0038 at 35.403 kb on - strand, within BT0038 at 35.408 kb on + strand, within BT0038 at 35.525 kb on - strand, within BT0038 at 35.562 kb on - strand, within BT0038 at 35.573 kb on + strand, within BT0038 at 35.580 kb on - strand, within BT0038 at 35.625 kb on + strand, within BT0038 at 35.629 kb on - strand, within BT0038 at 35.661 kb on + strand at 35.747 kb on + strand at 35.758 kb on + strand at 35.759 kb on - strand at 35.804 kb on + strand at 35.827 kb on + strand at 35.836 kb on + strand at 35.874 kb on + strand at 35.882 kb on - strand at 35.997 kb on - strand at 36.310 kb on - strand, within BT0039 at 36.323 kb on + strand, within BT0039 at 36.324 kb on - strand, within BT0039 at 36.324 kb on - strand, within BT0039 at 36.324 kb on - strand, within BT0039 at 36.341 kb on - strand, within BT0039 at 36.415 kb on + strand at 36.449 kb on - strand at 36.449 kb on - strand at 36.469 kb on + strand at 36.469 kb on + strand at 36.470 kb on - strand at 36.532 kb on + strand at 36.533 kb on - strand at 36.541 kb on - strand at 36.541 kb on - strand at 36.571 kb on - strand at 36.620 kb on - strand at 36.620 kb on - strand at 36.622 kb on - strand at 36.683 kb on + strand, within BT0040
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 14) - Cage7;Mouse3 remove 34,278 + BT0037 0.18 -0.8 34,279 - BT0037 0.18 +2.1 34,296 + BT0037 0.20 -1.5 34,305 + BT0037 0.21 -0.8 34,306 - BT0037 0.21 +0.8 34,428 - BT0037 0.32 -0.1 34,547 - BT0037 0.44 +0.9 34,549 + BT0037 0.44 -1.3 34,568 + BT0037 0.46 -2.4 34,579 - BT0037 0.47 +0.4 34,682 + BT0037 0.56 -0.6 34,684 + BT0037 0.57 -1.5 34,684 + BT0037 0.57 -0.1 34,684 + BT0037 0.57 -0.5 34,793 + BT0037 0.67 -0.4 34,962 + BT0037 0.83 -1.9 34,970 - BT0037 0.84 +0.9 35,006 + BT0037 0.87 -0.1 35,007 - BT0037 0.87 -2.8 35,009 + BT0037 0.87 +0.1 35,009 + BT0037 0.87 +0.4 35,010 - BT0037 0.87 +0.1 35,046 - -0.0 35,061 - -1.1 35,141 - +0.5 35,152 - -0.3 35,153 + -1.3 35,166 - -1.9 35,232 + -1.4 35,290 - -1.3 35,296 - -0.5 35,344 - BT0038 0.18 -1.3 35,402 + BT0038 0.31 -0.5 35,402 + BT0038 0.31 +0.0 35,403 - BT0038 0.31 +0.5 35,408 + BT0038 0.32 -0.7 35,525 - BT0038 0.59 +0.8 35,562 - BT0038 0.68 -0.5 35,573 + BT0038 0.70 -0.0 35,580 - BT0038 0.72 -0.5 35,625 + BT0038 0.82 -0.8 35,629 - BT0038 0.83 +0.5 35,661 + -1.1 35,747 + +1.0 35,758 + +1.5 35,759 - -3.1 35,804 + +0.8 35,827 + -2.4 35,836 + -1.1 35,874 + +1.0 35,882 - -0.6 35,997 - +0.5 36,310 - BT0039 0.75 -0.8 36,323 + BT0039 0.78 -0.4 36,324 - BT0039 0.78 +0.6 36,324 - BT0039 0.78 -2.3 36,324 - BT0039 0.78 -3.6 36,341 - BT0039 0.82 -1.2 36,415 + -2.2 36,449 - -1.1 36,449 - -0.8 36,469 + -2.1 36,469 + -0.3 36,470 - -1.3 36,532 + -0.8 36,533 - -2.1 36,541 - -1.2 36,541 - -1.1 36,571 - -1.5 36,620 - -0.1 36,620 - -1.4 36,622 - -1.1 36,683 + BT0040 0.13 +0.1
Or see this region's nucleotide sequence