Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3235

Experiment: Post-colonization (Day 12) - Cage5;Mouse4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 12) - Cage5;Mouse4
4,124,885	+		BT3234	0.36	-1.4
4,124,885	+		BT3234	0.36	-0.9
4,124,885	+		BT3234	0.36	+2.0
4,124,909	+		BT3234	0.38	-1.4
4,124,909	+		BT3234	0.38	-0.2
4,124,910	-		BT3234	0.38	-0.2
4,124,924	-		BT3234	0.40	+0.2
4,124,956	+		BT3234	0.42	-3.3
4,124,956	+		BT3234	0.42	-2.1
4,124,956	+		BT3234	0.42	-0.9
4,124,956	+		BT3234	0.42	-2.0
4,124,958	+		BT3234	0.42	-1.9
4,124,965	+		BT3234	0.43	-0.2
4,124,973	-		BT3234	0.44	-0.9
4,124,991	-		BT3234	0.45	+2.4
4,125,049	+		BT3234	0.50	+1.0
4,125,060	+		BT3234	0.51	+3.4
4,125,066	+		BT3234	0.51	-1.9
4,125,067	-		BT3234	0.52	-0.6
4,125,170	-		BT3234	0.60	+0.2
4,125,170	-		BT3234	0.60	-0.2
4,125,171	+				-0.9
4,125,233	+		BT3234	0.65	-0.2
4,125,234	-		BT3234	0.66	-2.3
4,125,244	-		BT3234	0.66	-2.8
4,125,247	+		BT3234	0.67	+0.6
4,125,250	+		BT3234	0.67	-0.7
4,125,251	-		BT3234	0.67	-1.3
4,125,254	-		BT3234	0.67	-2.2
4,125,275	+		BT3234	0.69	-0.6
4,125,276	-		BT3234	0.69	-0.8
4,125,276	-		BT3234	0.69	+0.4
4,125,280	+		BT3234	0.69	-1.3
4,125,294	+		BT3234	0.71	+0.4
4,125,328	-		BT3234	0.73	-0.2
4,125,357	+		BT3234	0.76	-1.8
4,125,358	-		BT3234	0.76	-0.2
4,125,368	+		BT3234	0.77	+1.3
4,125,384	+		BT3234	0.78	-1.2
4,125,384	+		BT3234	0.78	-2.2
4,125,385	-		BT3234	0.78	-0.8
4,125,387	+		BT3234	0.78	-0.3
4,125,457	+		BT3234	0.84	+1.0
4,125,485	-		BT3234	0.87	+0.1
4,125,496	+		BT3234	0.88	+1.4
4,125,497	-		BT3234	0.88	-0.4
4,125,502	+		BT3234	0.88	-0.6
4,125,503	-		BT3234	0.88	-0.1
4,125,523	-		BT3234	0.90	+0.3
4,125,524	+		BT3234	0.90	-0.9
4,125,525	-				+0.2
4,125,525	-				-0.3
4,125,525	-				-1.6
4,125,525	-				+0.4
4,125,525	-				-2.2
4,125,550	+				-1.2
4,125,551	-				-0.9
4,125,593	+				-0.5
4,125,594	-				+0.6
4,125,597	-				-0.7
4,125,617	+				-0.8
4,125,618	-				-0.0
4,125,618	-				+0.5
4,125,644	-				-1.1
4,125,644	-				-1.4
4,125,747	+				-0.6
4,125,748	-				-3.0
4,125,777	+				-1.4
4,125,778	-				-1.4
4,125,783	+				-0.9
4,125,784	-				-1.8
4,125,784	-				-1.4
4,125,798	+				-1.8
4,125,807	+				-0.5
4,125,814	+				+0.1
4,125,828	+				-1.5
4,125,828	+				-2.5
4,125,828	+				-2.3
4,125,828	+				-2.0
4,125,828	+				-2.7
4,125,829	-				-1.3
4,125,829	-				-2.0
4,125,832	+				-1.6
4,125,833	-				-2.2
4,125,850	+				-2.8
4,125,850	+				-2.8
4,125,863	+				-1.0
4,125,863	+				+0.8
4,125,946	-				-2.7
4,125,946	-				-1.4
4,125,979	-		BT3235	0.13	-0.9
4,125,979	-		BT3235	0.13	-4.9
4,126,013	-		BT3235	0.16	-2.3
4,126,022	-		BT3235	0.17	-0.9
4,126,022	-		BT3235	0.17	-1.6
4,126,048	+		BT3235	0.19	-1.4
4,126,049	-		BT3235	0.19	-2.3
4,126,068	+		BT3235	0.21	-4.1
4,126,074	-		BT3235	0.22	-0.6
4,126,082	+		BT3235	0.23	-1.4
4,126,082	+		BT3235	0.23	-2.2
4,126,082	+		BT3235	0.23	-2.7
4,126,083	-		BT3235	0.23	-3.6
4,126,085	-		BT3235	0.23	-1.9
4,126,097	-		BT3235	0.24	-0.2
4,126,097	-		BT3235	0.24	-2.0
4,126,097	-		BT3235	0.24	-0.6
4,126,109	+		BT3235	0.25	-1.4
4,126,110	-		BT3235	0.25	-3.8
4,126,128	+		BT3235	0.27	-1.8
4,126,145	-		BT3235	0.29	-5.3
4,126,145	-		BT3235	0.29	-0.2
4,126,187	-		BT3235	0.33	-2.5
4,126,197	-		BT3235	0.34	-2.2
4,126,197	-		BT3235	0.34	-2.4
4,126,218	+		BT3235	0.36	-1.0
4,126,219	-		BT3235	0.36	-1.6
4,126,237	-		BT3235	0.37	-0.9
4,126,241	+		BT3235	0.38	-0.6
4,126,241	+		BT3235	0.38	-2.0
4,126,242	-		BT3235	0.38	-0.9
4,126,244	+		BT3235	0.38	-1.4
4,126,244	+		BT3235	0.38	-3.5
4,126,244	+		BT3235	0.38	-1.8
4,126,244	+		BT3235	0.38	-1.6
4,126,244	+		BT3235	0.38	-1.8
4,126,245	-		BT3235	0.38	-2.8
4,126,245	-		BT3235	0.38	-3.4
4,126,316	-		BT3235	0.45	-1.2
4,126,346	+		BT3235	0.48	-1.0
4,126,390	+		BT3235	0.52	-1.0
4,126,392	-		BT3235	0.52	-0.6
4,126,401	-		BT3235	0.53	-0.9
4,126,401	-		BT3235	0.53	-3.2
4,126,426	+		BT3235	0.56	-1.8
4,126,426	+		BT3235	0.56	+0.2
4,126,427	-		BT3235	0.56	-0.2
4,126,427	-		BT3235	0.56	-0.2
4,126,468	+				+2.4
4,126,468	+		BT3235	0.60	-1.0
4,126,491	+		BT3235	0.62	+0.1
4,126,514	-		BT3235	0.64	-1.0
4,126,518	-		BT3235	0.65	-0.9
4,126,546	+		BT3235	0.67	-2.3
4,126,553	+		BT3235	0.68	-0.2
4,126,554	-		BT3235	0.68	-3.1
4,126,611	+		BT3235	0.74	-1.1
4,126,634	+		BT3235	0.76	+0.4
4,126,640	+		BT3235	0.76	-0.7
4,126,662	+		BT3235	0.79	-2.0
4,126,662	+		BT3235	0.79	-0.7
4,126,664	+		BT3235	0.79	+0.7
4,126,689	-		BT3235	0.81	-1.5
4,126,824	-				-1.3
4,126,826	+				-1.8
4,126,843	-				-0.2
4,126,848	+				-1.0
4,126,854	+				-0.9
4,126,855	-				+0.4
4,126,873	-				-0.6
4,126,883	+				-0.8
4,126,884	-				-1.8
4,126,884	-				-2.2
4,126,884	-				-2.5
4,126,886	+				-1.8
4,126,886	+				-0.8
4,126,887	-				-2.3
4,126,891	+				-3.0
4,126,985	-				-5.8
4,126,985	-				-1.2
4,127,011	-				-6.6
4,127,011	-				-1.2
4,127,048	-		BT3236	0.12	-2.4
4,127,108	+		BT3236	0.16	+1.1
4,127,109	-		BT3236	0.17	-1.8
4,127,111	+		BT3236	0.17	-3.1
4,127,112	-		BT3236	0.17	-0.2
4,127,115	-		BT3236	0.17	-1.6
4,127,115	-		BT3236	0.17	-2.9
4,127,115	-		BT3236	0.17	-3.9
4,127,133	-		BT3236	0.18	-0.2
4,127,176	+		BT3236	0.22	-1.8
4,127,176	+		BT3236	0.22	-0.9
4,127,179	+		BT3236	0.22	-1.6
4,127,180	-		BT3236	0.22	-1.8
4,127,180	-		BT3236	0.22	-3.3
4,127,181	+		BT3236	0.22	-2.6
4,127,182	-		BT3236	0.22	-1.9
4,127,182	-		BT3236	0.22	+0.4
4,127,182	-		BT3236	0.22	-2.3
4,127,201	-		BT3236	0.24	-1.6
4,127,270	+		BT3236	0.29	-1.2
4,127,272	+		BT3236	0.30	-1.2
4,127,272	+		BT3236	0.30	+0.1
4,127,272	+		BT3236	0.30	-0.2
4,127,288	+		BT3236	0.31	-1.6
4,127,294	+		BT3236	0.31	+0.8
4,127,295	-		BT3236	0.31	-0.2
4,127,298	-		BT3236	0.32	-2.1
4,127,299	+		BT3236	0.32	-2.6
4,127,299	+		BT3236	0.32	-1.4
4,127,301	+		BT3236	0.32	-0.6
4,127,301	+		BT3236	0.32	-1.8
4,127,301	+		BT3236	0.32	-1.2
4,127,302	-		BT3236	0.32	-0.2
4,127,309	+		BT3236	0.32	-3.0
4,127,309	+		BT3236	0.32	-1.7
4,127,366	-		BT3236	0.37	-2.8
4,127,380	-		BT3236	0.38	-2.3
4,127,380	-		BT3236	0.38	-2.2
4,127,383	+		BT3236	0.38	-0.4
4,127,429	-		BT3236	0.42	-0.6
4,127,435	+		BT3236	0.42	-1.4
4,127,469	+		BT3236	0.45	-0.5
4,127,472	-		BT3236	0.45	-2.1
4,127,483	+		BT3236	0.46	-0.9
4,127,484	-		BT3236	0.46	-2.4
4,127,585	-		BT3236	0.54	-1.4
4,127,586	+		BT3236	0.54	-1.9
4,127,587	-		BT3236	0.55	-2.7
4,127,591	+		BT3236	0.55	-0.6
4,127,595	+		BT3236	0.55	-1.8
4,127,595	+		BT3236	0.55	-1.8
4,127,596	-		BT3236	0.55	+0.4
4,127,596	-		BT3236	0.55	-3.3
4,127,770	+				-0.2
4,127,811	+		BT3236	0.72	+0.3
4,127,812	-		BT3236	0.72	-0.6
4,127,826	-		BT3236	0.74	-1.4
4,127,857	-		BT3236	0.76	-0.2