Experiment: Post-colonization (Day 12) - Cage5;Mouse4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0612 and BT0613 are separated by 222 nucleotides BT0613 and BT0614 are separated by 12 nucleotides
BT0612: BT0612 - putative aminotransferase (NCBI ptt file), at 755,823 to 757,097
BT0612
BT0613: BT0613 - putative membrane protein involved in polysaccharide export (NCBI ptt file), at 757,320 to 758,273
BT0613
BT0614: BT0614 - putative tyrosine-protein kinase in cps region (NCBI ptt file), at 758,286 to 760,724
BT0614
Position (kb) 757
758
759 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 756.515 kb on + strand, within BT0612 at 756.654 kb on + strand, within BT0612 at 756.662 kb on + strand, within BT0612 at 756.717 kb on - strand, within BT0612 at 756.831 kb on + strand, within BT0612 at 757.007 kb on + strand at 757.052 kb on - strand at 757.052 kb on - strand at 757.080 kb on - strand at 757.126 kb on + strand at 757.163 kb on - strand at 757.176 kb on - strand at 757.176 kb on - strand at 757.251 kb on - strand at 757.355 kb on + strand at 757.404 kb on - strand at 757.590 kb on - strand, within BT0613 at 757.662 kb on - strand, within BT0613 at 757.750 kb on + strand, within BT0613 at 757.782 kb on - strand, within BT0613 at 757.898 kb on - strand, within BT0613 at 757.898 kb on - strand, within BT0613 at 757.898 kb on - strand, within BT0613 at 758.018 kb on - strand, within BT0613 at 758.018 kb on - strand, within BT0613 at 758.199 kb on - strand at 758.241 kb on - strand at 758.258 kb on + strand at 758.644 kb on - strand, within BT0614 at 758.645 kb on + strand, within BT0614 at 758.762 kb on - strand, within BT0614 at 758.797 kb on + strand, within BT0614 at 758.937 kb on - strand, within BT0614 at 758.994 kb on - strand, within BT0614 at 759.084 kb on - strand, within BT0614 at 759.182 kb on + strand, within BT0614 at 759.204 kb on - strand, within BT0614
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 12) - Cage5;Mouse4 remove 756,515 + BT0612 0.54 -0.5 756,654 + BT0612 0.65 +0.5 756,662 + BT0612 0.66 -1.7 756,717 - BT0612 0.70 -1.7 756,831 + BT0612 0.79 +1.5 757,007 + +0.5 757,052 - +0.5 757,052 - -0.5 757,080 - -1.0 757,126 + +1.5 757,163 - -0.1 757,176 - -0.5 757,176 - -0.5 757,251 - +1.0 757,355 + -0.5 757,404 - +0.8 757,590 - BT0613 0.28 -2.5 757,662 - BT0613 0.36 -1.1 757,750 + BT0613 0.45 -0.5 757,782 - BT0613 0.48 -0.5 757,898 - BT0613 0.61 -1.4 757,898 - BT0613 0.61 -0.9 757,898 - BT0613 0.61 -1.5 758,018 - BT0613 0.73 -1.5 758,018 - BT0613 0.73 -1.2 758,199 - -1.4 758,241 - +0.9 758,258 + -2.2 758,644 - BT0614 0.15 -0.9 758,645 + BT0614 0.15 -2.8 758,762 - BT0614 0.20 -1.5 758,797 + BT0614 0.21 -1.0 758,937 - BT0614 0.27 -1.1 758,994 - BT0614 0.29 -0.9 759,084 - BT0614 0.33 -0.7 759,182 + BT0614 0.37 -0.9 759,204 - BT0614 0.38 +0.0
Or see this region's nucleotide sequence