Experiment: Post-colonization (Day 12) - Cage5;Mouse4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0192 and BT0193 are separated by 6 nucleotides BT0193 and BT0194 are separated by 1 nucleotides BT0194 and BT0195 are separated by 20 nucleotides BT0195 and BT0196 are separated by 12 nucleotides
BT0192: BT0192 - cell surface protein (NCBI ptt file), at 205,007 to 206,974
BT0192
BT0193: BT0193 - conserved hypothetical protein (NCBI ptt file), at 206,981 to 207,862
BT0193
BT0194: BT0194 - hypothetical protein (NCBI ptt file), at 207,864 to 208,922
BT0194
BT0195: BT0195 - glycerophosphoryl diester phosphodiesterase (NCBI ptt file), at 208,943 to 209,842
BT0195
BT0196: BT0196 - putative hexose phosphate transport protein (NCBI ptt file), at 209,855 to 211,201
BT0196
Position (kb) 207
208
209 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 206.875 kb on + strand at 206.947 kb on + strand at 207.430 kb on + strand, within BT0193 at 207.430 kb on + strand, within BT0193 at 207.527 kb on - strand, within BT0193 at 207.619 kb on - strand, within BT0193 at 207.640 kb on - strand, within BT0193 at 207.741 kb on - strand, within BT0193 at 207.846 kb on - strand at 207.848 kb on - strand at 207.861 kb on - strand at 207.863 kb on + strand at 207.950 kb on + strand at 208.091 kb on + strand, within BT0194 at 208.145 kb on + strand, within BT0194 at 208.264 kb on - strand, within BT0194 at 208.275 kb on + strand, within BT0194 at 208.283 kb on + strand, within BT0194 at 208.284 kb on - strand, within BT0194 at 208.284 kb on - strand, within BT0194 at 208.313 kb on + strand, within BT0194 at 208.314 kb on - strand, within BT0194 at 208.348 kb on - strand, within BT0194 at 208.501 kb on + strand, within BT0194 at 208.502 kb on - strand, within BT0194 at 208.506 kb on - strand, within BT0194 at 208.569 kb on - strand, within BT0194 at 208.613 kb on + strand, within BT0194 at 208.651 kb on - strand, within BT0194 at 208.674 kb on - strand, within BT0194 at 208.869 kb on + strand at 208.870 kb on - strand at 209.131 kb on + strand, within BT0195 at 209.279 kb on - strand, within BT0195 at 209.356 kb on - strand, within BT0195 at 209.356 kb on - strand, within BT0195 at 209.400 kb on - strand, within BT0195 at 209.491 kb on - strand, within BT0195 at 209.589 kb on - strand, within BT0195 at 209.589 kb on - strand, within BT0195 at 209.598 kb on + strand, within BT0195 at 209.644 kb on - strand, within BT0195 at 209.803 kb on - strand at 209.870 kb on - strand at 209.918 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 12) - Cage5;Mouse4 remove 206,875 + -2.4 206,947 + +0.4 207,430 + BT0193 0.51 -0.9 207,430 + BT0193 0.51 +1.8 207,527 - BT0193 0.62 -0.4 207,619 - BT0193 0.72 +1.4 207,640 - BT0193 0.75 -0.6 207,741 - BT0193 0.86 -1.6 207,846 - +0.7 207,848 - +2.0 207,861 - +0.0 207,863 + -0.2 207,950 + -0.5 208,091 + BT0194 0.21 -0.6 208,145 + BT0194 0.27 -2.0 208,264 - BT0194 0.38 -1.4 208,275 + BT0194 0.39 +0.4 208,283 + BT0194 0.40 +2.0 208,284 - BT0194 0.40 -1.4 208,284 - BT0194 0.40 -1.6 208,313 + BT0194 0.42 -1.0 208,314 - BT0194 0.42 -2.3 208,348 - BT0194 0.46 -1.4 208,501 + BT0194 0.60 -1.4 208,502 - BT0194 0.60 -0.9 208,506 - BT0194 0.61 -0.2 208,569 - BT0194 0.67 -3.7 208,613 + BT0194 0.71 -1.6 208,651 - BT0194 0.74 +0.4 208,674 - BT0194 0.76 +0.4 208,869 + +0.4 208,870 - -0.6 209,131 + BT0195 0.21 +1.4 209,279 - BT0195 0.37 -2.2 209,356 - BT0195 0.46 -0.9 209,356 - BT0195 0.46 +5.3 209,400 - BT0195 0.51 +0.0 209,491 - BT0195 0.61 -2.8 209,589 - BT0195 0.72 +0.4 209,589 - BT0195 0.72 -1.6 209,598 + BT0195 0.73 +0.8 209,644 - BT0195 0.78 -1.2 209,803 - +1.4 209,870 - -1.9 209,918 - -0.2
Or see this region's nucleotide sequence