Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Pf6N2E2_3689 and Pf6N2E2_3690 are separated by 278 nucleotides Pf6N2E2_3690 and Pf6N2E2_3691 are separated by 34 nucleotides
Pf6N2E2_3689 - Methyl-accepting chemotaxis protein I (serine chemoreceptor protein), at 4,302,124 to 4,303,734
_3689
Pf6N2E2_3690 - Na(+)/H(+) antiporter, at 4,304,013 to 4,305,755
_3690
Pf6N2E2_3691 - Potassium efflux system KefA protein / Small-conductance mechanosensitive channel, at 4,305,790 to 4,309,152
_3691
Position (kb)
4304
4305
4306 Strain fitness (log2 ratio)
-1
0
1
2 at 4303.732 kb on + strand at 4303.889 kb on + strand at 4303.890 kb on - strand at 4303.890 kb on - strand at 4303.945 kb on + strand at 4303.946 kb on - strand at 4303.946 kb on - strand at 4303.946 kb on - strand at 4303.946 kb on - strand at 4303.991 kb on + strand at 4303.991 kb on + strand at 4304.021 kb on + strand at 4304.022 kb on - strand at 4304.063 kb on - strand at 4304.063 kb on - strand at 4304.182 kb on - strand at 4304.182 kb on - strand at 4304.182 kb on - strand at 4304.193 kb on + strand, within Pf6N2E2_3690 at 4304.194 kb on - strand, within Pf6N2E2_3690 at 4304.194 kb on - strand, within Pf6N2E2_3690 at 4304.757 kb on + strand, within Pf6N2E2_3690 at 4304.758 kb on - strand, within Pf6N2E2_3690 at 4304.866 kb on + strand, within Pf6N2E2_3690 at 4304.866 kb on + strand, within Pf6N2E2_3690 at 4304.867 kb on - strand, within Pf6N2E2_3690 at 4304.867 kb on - strand, within Pf6N2E2_3690 at 4305.014 kb on + strand, within Pf6N2E2_3690 at 4305.100 kb on - strand, within Pf6N2E2_3690 at 4305.100 kb on - strand, within Pf6N2E2_3690 at 4305.256 kb on + strand, within Pf6N2E2_3690 at 4305.256 kb on + strand, within Pf6N2E2_3690 at 4305.256 kb on + strand, within Pf6N2E2_3690 at 4305.256 kb on + strand, within Pf6N2E2_3690 at 4305.256 kb on + strand, within Pf6N2E2_3690 at 4305.257 kb on - strand, within Pf6N2E2_3690 at 4305.257 kb on - strand, within Pf6N2E2_3690 at 4305.257 kb on - strand, within Pf6N2E2_3690 at 4305.257 kb on - strand, within Pf6N2E2_3690 at 4305.384 kb on - strand, within Pf6N2E2_3690 at 4305.508 kb on + strand, within Pf6N2E2_3690 at 4305.509 kb on - strand, within Pf6N2E2_3690 at 4305.549 kb on + strand, within Pf6N2E2_3690 at 4305.550 kb on - strand, within Pf6N2E2_3690 at 4305.753 kb on + strand at 4305.754 kb on - strand at 4305.789 kb on + strand at 4305.789 kb on + strand at 4305.790 kb on - strand at 4305.810 kb on + strand at 4305.887 kb on + strand at 4305.988 kb on - strand at 4305.997 kb on + strand at 4305.998 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 4,303,732 + -0.6 4,303,889 + +0.3 4,303,890 - -1.3 4,303,890 - +0.3 4,303,945 + -0.3 4,303,946 - -0.7 4,303,946 - -0.2 4,303,946 - -0.8 4,303,946 - +0.8 4,303,991 + -1.2 4,303,991 + +0.2 4,304,021 + +0.8 4,304,022 - -1.5 4,304,063 - -0.2 4,304,063 - +1.8 4,304,182 - +1.8 4,304,182 - +0.8 4,304,182 - +0.8 4,304,193 + Pf6N2E2_3690 0.10 -0.5 4,304,194 - Pf6N2E2_3690 0.10 +1.8 4,304,194 - Pf6N2E2_3690 0.10 +1.8 4,304,757 + Pf6N2E2_3690 0.43 +1.8 4,304,758 - Pf6N2E2_3690 0.43 +0.8 4,304,866 + Pf6N2E2_3690 0.49 +1.8 4,304,866 + Pf6N2E2_3690 0.49 +1.8 4,304,867 - Pf6N2E2_3690 0.49 -0.2 4,304,867 - Pf6N2E2_3690 0.49 +0.8 4,305,014 + Pf6N2E2_3690 0.57 +0.2 4,305,100 - Pf6N2E2_3690 0.62 +1.8 4,305,100 - Pf6N2E2_3690 0.62 +0.2 4,305,256 + Pf6N2E2_3690 0.71 -0.8 4,305,256 + Pf6N2E2_3690 0.71 +0.8 4,305,256 + Pf6N2E2_3690 0.71 +1.8 4,305,256 + Pf6N2E2_3690 0.71 +0.8 4,305,256 + Pf6N2E2_3690 0.71 -0.5 4,305,257 - Pf6N2E2_3690 0.71 +1.8 4,305,257 - Pf6N2E2_3690 0.71 -0.5 4,305,257 - Pf6N2E2_3690 0.71 +1.8 4,305,257 - Pf6N2E2_3690 0.71 -1.0 4,305,384 - Pf6N2E2_3690 0.79 +0.8 4,305,508 + Pf6N2E2_3690 0.86 -0.2 4,305,509 - Pf6N2E2_3690 0.86 +0.2 4,305,549 + Pf6N2E2_3690 0.88 +0.8 4,305,550 - Pf6N2E2_3690 0.88 +1.8 4,305,753 + +1.8 4,305,754 - +0.5 4,305,789 + -0.5 4,305,789 + +0.8 4,305,790 - +1.4 4,305,810 + -1.4 4,305,887 + +0.5 4,305,988 - +1.8 4,305,997 + -1.0 4,305,998 - +1.8
Or see this region's nucleotide sequence