Strain Fitness in Pseudomonas fluorescens FW300-N2E2 around Pf6N2E2_2443

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPf6N2E2_2442 and Pf6N2E2_2443 overlap by 17 nucleotidesPf6N2E2_2443 and Pf6N2E2_2444 overlap by 4 nucleotidesPf6N2E2_2444 and Pf6N2E2_2445 are separated by 255 nucleotides Pf6N2E2_2442 - sensor histidine kinase/response regulator, at 2,892,529 to 2,894,850 _2442 Pf6N2E2_2443 - Organic hydroperoxide resistance transcriptional regulator, at 2,894,834 to 2,895,295 _2443 Pf6N2E2_2444 - Glutathione peroxidase family protein, at 2,895,292 to 2,895,777 _2444 Pf6N2E2_2445 - Peptide methionine sulfoxide reductase MsrB (EC 1.8.4.12), at 2,896,033 to 2,896,425 _2445 Position (kb) 2894 2895 2896Strain fitness (log2 ratio) -1 0 1 2at 2893.975 kb on + strand, within Pf6N2E2_2442at 2893.975 kb on + strand, within Pf6N2E2_2442at 2893.975 kb on + strand, within Pf6N2E2_2442at 2893.975 kb on + strand, within Pf6N2E2_2442at 2893.975 kb on + strand, within Pf6N2E2_2442at 2893.975 kb on + strand, within Pf6N2E2_2442at 2893.976 kb on - strand, within Pf6N2E2_2442at 2893.976 kb on - strand, within Pf6N2E2_2442at 2893.976 kb on - strand, within Pf6N2E2_2442at 2894.182 kb on + strand, within Pf6N2E2_2442at 2894.182 kb on + strand, within Pf6N2E2_2442at 2894.182 kb on + strand, within Pf6N2E2_2442at 2894.182 kb on + strand, within Pf6N2E2_2442at 2894.183 kb on - strand, within Pf6N2E2_2442at 2894.309 kb on - strand, within Pf6N2E2_2442at 2894.357 kb on + strand, within Pf6N2E2_2442at 2894.357 kb on + strand, within Pf6N2E2_2442at 2894.357 kb on + strand, within Pf6N2E2_2442at 2894.357 kb on + strand, within Pf6N2E2_2442at 2894.358 kb on - strand, within Pf6N2E2_2442at 2894.393 kb on - strand, within Pf6N2E2_2442at 2894.773 kb on + strandat 2894.773 kb on + strandat 2894.835 kb on + strandat 2894.836 kb on - strandat 2895.084 kb on - strand, within Pf6N2E2_2443at 2895.166 kb on - strand, within Pf6N2E2_2443at 2895.207 kb on + strand, within Pf6N2E2_2443at 2895.208 kb on - strand, within Pf6N2E2_2443at 2895.208 kb on - strand, within Pf6N2E2_2443at 2895.237 kb on + strand, within Pf6N2E2_2443at 2895.237 kb on + strand, within Pf6N2E2_2443at 2895.237 kb on + strand, within Pf6N2E2_2443at 2895.238 kb on - strand, within Pf6N2E2_2443at 2895.444 kb on + strand, within Pf6N2E2_2444at 2895.445 kb on - strand, within Pf6N2E2_2444at 2895.445 kb on - strand, within Pf6N2E2_2444at 2895.445 kb on - strand, within Pf6N2E2_2444at 2895.621 kb on - strandat 2895.621 kb on - strand, within Pf6N2E2_2444at 2895.650 kb on + strand, within Pf6N2E2_2444at 2895.650 kb on + strand, within Pf6N2E2_2444at 2895.651 kb on - strand, within Pf6N2E2_2444at 2895.797 kb on + strandat 2895.924 kb on + strandat 2896.214 kb on + strand, within Pf6N2E2_2445at 2896.292 kb on + strand, within Pf6N2E2_2445at 2896.292 kb on + strand, within Pf6N2E2_2445

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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2,893,975 + Pf6N2E2_2442 0.62 +0.7
2,893,975 + Pf6N2E2_2442 0.62 +0.4
2,893,975 + Pf6N2E2_2442 0.62 +0.4
2,893,975 + Pf6N2E2_2442 0.62 -0.7
2,893,975 + Pf6N2E2_2442 0.62 +0.6
2,893,975 + Pf6N2E2_2442 0.62 +0.0
2,893,976 - Pf6N2E2_2442 0.62 -0.9
2,893,976 - Pf6N2E2_2442 0.62 +0.6
2,893,976 - Pf6N2E2_2442 0.62 -0.1
2,894,182 + Pf6N2E2_2442 0.71 -0.6
2,894,182 + Pf6N2E2_2442 0.71 -0.0
2,894,182 + Pf6N2E2_2442 0.71 -0.7
2,894,182 + Pf6N2E2_2442 0.71 +0.3
2,894,183 - Pf6N2E2_2442 0.71 +1.0
2,894,309 - Pf6N2E2_2442 0.77 -1.4
2,894,357 + Pf6N2E2_2442 0.79 -0.6
2,894,357 + Pf6N2E2_2442 0.79 +0.4
2,894,357 + Pf6N2E2_2442 0.79 -0.6
2,894,357 + Pf6N2E2_2442 0.79 +1.0
2,894,358 - Pf6N2E2_2442 0.79 -0.5
2,894,393 - Pf6N2E2_2442 0.80 -1.5
2,894,773 + +0.2
2,894,773 + -0.1
2,894,835 + +0.1
2,894,836 - +0.3
2,895,084 - Pf6N2E2_2443 0.54 -1.2
2,895,166 - Pf6N2E2_2443 0.72 -0.6
2,895,207 + Pf6N2E2_2443 0.81 +1.2
2,895,208 - Pf6N2E2_2443 0.81 +0.9
2,895,208 - Pf6N2E2_2443 0.81 +0.1
2,895,237 + Pf6N2E2_2443 0.87 +1.1
2,895,237 + Pf6N2E2_2443 0.87 +1.0
2,895,237 + Pf6N2E2_2443 0.87 +0.1
2,895,238 - Pf6N2E2_2443 0.87 +0.1
2,895,444 + Pf6N2E2_2444 0.31 +1.9
2,895,445 - Pf6N2E2_2444 0.31 +0.0
2,895,445 - Pf6N2E2_2444 0.31 -0.1
2,895,445 - Pf6N2E2_2444 0.31 -0.9
2,895,621 - +1.9
2,895,621 - Pf6N2E2_2444 0.68 -1.2
2,895,650 + Pf6N2E2_2444 0.74 -0.1
2,895,650 + Pf6N2E2_2444 0.74 -0.8
2,895,651 - Pf6N2E2_2444 0.74 -0.1
2,895,797 + +0.3
2,895,924 + -0.4
2,896,214 + Pf6N2E2_2445 0.46 -0.1
2,896,292 + Pf6N2E2_2445 0.66 -0.8
2,896,292 + Pf6N2E2_2445 0.66 +0.2

Or see this region's nucleotide sequence