Experiment: Post-colonization (Day 12) - Cage1;Mouse5
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0728 and BT0729 are separated by 33 nucleotides BT0729 and BT0730 are separated by 248 nucleotides
BT0728: BT0728 - transcriptional regulator (NCBI ptt file), at 902,016 to 902,915
BT0728
BT0729: BT0729 - transcriptional regulator (NCBI ptt file), at 902,949 to 903,851
BT0729
BT0730: BT0730 - putative mRNA-binding protein (NCBI ptt file), at 904,100 to 905,116
BT0730
Position (kb) 902
903
904 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 902.130 kb on - strand, within BT0728 at 902.136 kb on - strand, within BT0728 at 902.140 kb on - strand, within BT0728 at 902.140 kb on - strand, within BT0728 at 902.154 kb on - strand, within BT0728 at 902.154 kb on - strand, within BT0728 at 902.209 kb on + strand, within BT0728 at 902.251 kb on - strand, within BT0728 at 902.303 kb on + strand, within BT0728 at 902.413 kb on - strand, within BT0728 at 902.445 kb on - strand, within BT0728 at 902.447 kb on - strand, within BT0728 at 902.447 kb on - strand, within BT0728 at 902.499 kb on + strand, within BT0728 at 902.500 kb on - strand, within BT0728 at 902.716 kb on + strand, within BT0728 at 902.877 kb on + strand at 902.897 kb on + strand at 902.897 kb on + strand at 902.906 kb on + strand at 902.963 kb on + strand at 902.963 kb on + strand at 902.979 kb on - strand at 903.115 kb on + strand, within BT0729 at 903.345 kb on + strand, within BT0729 at 903.482 kb on - strand, within BT0729 at 903.549 kb on + strand, within BT0729 at 903.653 kb on - strand, within BT0729 at 903.709 kb on + strand, within BT0729 at 903.726 kb on - strand, within BT0729 at 903.815 kb on - strand at 903.891 kb on + strand at 903.892 kb on - strand at 903.892 kb on - strand at 903.897 kb on + strand at 903.938 kb on + strand at 904.110 kb on + strand at 904.229 kb on - strand, within BT0730 at 904.419 kb on - strand, within BT0730 at 904.422 kb on + strand, within BT0730 at 904.552 kb on + strand, within BT0730 at 904.595 kb on - strand, within BT0730 at 904.616 kb on - strand, within BT0730 at 904.622 kb on - strand, within BT0730 at 904.706 kb on + strand, within BT0730 at 904.707 kb on - strand, within BT0730
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 12) - Cage1;Mouse5 remove 902,130 - BT0728 0.13 -0.6 902,136 - BT0728 0.13 -1.6 902,140 - BT0728 0.14 +2.0 902,140 - BT0728 0.14 -2.4 902,154 - BT0728 0.15 +2.0 902,154 - BT0728 0.15 -2.0 902,209 + BT0728 0.21 -2.2 902,251 - BT0728 0.26 -3.8 902,303 + BT0728 0.32 -1.4 902,413 - BT0728 0.44 -1.9 902,445 - BT0728 0.48 -1.9 902,447 - BT0728 0.48 -1.0 902,447 - BT0728 0.48 -0.6 902,499 + BT0728 0.54 -2.0 902,500 - BT0728 0.54 -4.3 902,716 + BT0728 0.78 -0.0 902,877 + -3.4 902,897 + -0.6 902,897 + -1.6 902,906 + -2.0 902,963 + -0.0 902,963 + -1.1 902,979 - +2.3 903,115 + BT0729 0.18 -0.0 903,345 + BT0729 0.44 -0.7 903,482 - BT0729 0.59 -1.0 903,549 + BT0729 0.66 -1.0 903,653 - BT0729 0.78 -2.4 903,709 + BT0729 0.84 -1.4 903,726 - BT0729 0.86 -0.0 903,815 - -1.2 903,891 + -0.0 903,892 - +1.0 903,892 - -0.0 903,897 + +1.5 903,938 + -1.6 904,110 + -2.2 904,229 - BT0730 0.13 -1.0 904,419 - BT0730 0.31 -2.2 904,422 + BT0730 0.32 -2.2 904,552 + BT0730 0.44 -2.4 904,595 - BT0730 0.49 -1.8 904,616 - BT0730 0.51 -1.6 904,622 - BT0730 0.51 -2.2 904,706 + BT0730 0.60 -2.4 904,707 - BT0730 0.60 -0.8
Or see this region's nucleotide sequence