Experiment: Post-colonization (Day 10) - Cage5;Mouse3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4574 and BT4575 are separated by 107 nucleotides BT4575 and BT4576 are separated by 11 nucleotides BT4576 and BT4577 are separated by 321 nucleotides BT4577 and BT4578 are separated by 32 nucleotides
BT4574: BT4574 - conserved hypothetical protein (NCBI ptt file), at 5,995,271 to 5,995,645
BT4574
BT4575: BT4575 - hypothetical protein (NCBI ptt file), at 5,995,753 to 5,996,529
BT4575
BT4576: BT4576 - hypothetical protein (NCBI ptt file), at 5,996,541 to 5,997,377
BT4576
BT4577: BT4577 - hypothetical protein (NCBI ptt file), at 5,997,699 to 5,998,061
BT4577
BT4578: BT4578 - transposase (NCBI ptt file), at 5,998,094 to 5,998,987
BT4578
Position (kb) 5996
5997
5998 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5995.645 kb on + strand at 5995.934 kb on + strand, within BT4575 at 5995.934 kb on + strand, within BT4575 at 5995.935 kb on - strand, within BT4575 at 5995.935 kb on - strand, within BT4575 at 5996.023 kb on - strand, within BT4575 at 5996.024 kb on + strand, within BT4575 at 5996.024 kb on + strand, within BT4575 at 5996.025 kb on - strand, within BT4575 at 5996.025 kb on - strand, within BT4575 at 5996.025 kb on - strand, within BT4575 at 5996.025 kb on - strand, within BT4575 at 5996.026 kb on + strand, within BT4575 at 5996.026 kb on + strand, within BT4575 at 5996.026 kb on + strand, within BT4575 at 5996.027 kb on - strand, within BT4575 at 5996.091 kb on + strand, within BT4575 at 5996.231 kb on - strand, within BT4575 at 5996.254 kb on + strand, within BT4575 at 5996.256 kb on + strand, within BT4575 at 5996.257 kb on - strand, within BT4575 at 5996.287 kb on + strand, within BT4575 at 5996.307 kb on - strand, within BT4575 at 5996.353 kb on - strand, within BT4575 at 5996.396 kb on + strand, within BT4575 at 5996.523 kb on + strand at 5996.627 kb on + strand, within BT4576 at 5996.630 kb on - strand, within BT4576 at 5996.630 kb on - strand, within BT4576 at 5996.684 kb on + strand, within BT4576 at 5996.695 kb on + strand, within BT4576 at 5996.706 kb on + strand, within BT4576 at 5996.736 kb on - strand, within BT4576 at 5996.769 kb on + strand, within BT4576 at 5996.858 kb on + strand, within BT4576 at 5996.858 kb on + strand, within BT4576 at 5996.872 kb on + strand, within BT4576 at 5996.873 kb on - strand, within BT4576 at 5996.929 kb on + strand, within BT4576 at 5996.958 kb on + strand, within BT4576 at 5997.032 kb on - strand, within BT4576 at 5997.039 kb on - strand, within BT4576 at 5997.082 kb on + strand, within BT4576 at 5997.083 kb on - strand, within BT4576 at 5997.138 kb on + strand, within BT4576 at 5997.194 kb on - strand, within BT4576 at 5997.196 kb on + strand, within BT4576 at 5997.197 kb on - strand, within BT4576 at 5997.225 kb on + strand, within BT4576 at 5997.269 kb on + strand, within BT4576 at 5997.378 kb on - strand at 5997.380 kb on + strand at 5997.381 kb on - strand at 5997.383 kb on + strand at 5997.390 kb on - strand at 5997.390 kb on - strand at 5997.437 kb on + strand at 5997.438 kb on - strand at 5997.438 kb on - strand at 5997.440 kb on - strand at 5997.448 kb on - strand at 5997.452 kb on + strand at 5997.548 kb on - strand at 5997.620 kb on - strand at 5997.672 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 10) - Cage5;Mouse3 remove 5,995,645 + -1.2 5,995,934 + BT4575 0.23 -1.9 5,995,934 + BT4575 0.23 +0.8 5,995,935 - BT4575 0.23 -2.1 5,995,935 - BT4575 0.23 +0.8 5,996,023 - BT4575 0.35 -1.2 5,996,024 + BT4575 0.35 -0.6 5,996,024 + BT4575 0.35 -0.7 5,996,025 - BT4575 0.35 -0.4 5,996,025 - BT4575 0.35 -0.7 5,996,025 - BT4575 0.35 -3.1 5,996,025 - BT4575 0.35 -0.6 5,996,026 + BT4575 0.35 +0.8 5,996,026 + BT4575 0.35 -0.7 5,996,026 + BT4575 0.35 +0.0 5,996,027 - BT4575 0.35 -0.5 5,996,091 + BT4575 0.44 -3.0 5,996,231 - BT4575 0.62 +0.0 5,996,254 + BT4575 0.64 -0.6 5,996,256 + BT4575 0.65 +0.4 5,996,257 - BT4575 0.65 -2.1 5,996,287 + BT4575 0.69 -2.2 5,996,307 - BT4575 0.71 -1.4 5,996,353 - BT4575 0.77 -1.3 5,996,396 + BT4575 0.83 +0.4 5,996,523 + -0.6 5,996,627 + BT4576 0.10 +0.8 5,996,630 - BT4576 0.11 -1.0 5,996,630 - BT4576 0.11 -0.6 5,996,684 + BT4576 0.17 -1.9 5,996,695 + BT4576 0.18 -0.6 5,996,706 + BT4576 0.20 +0.4 5,996,736 - BT4576 0.23 +1.0 5,996,769 + BT4576 0.27 +2.0 5,996,858 + BT4576 0.38 -0.4 5,996,858 + BT4576 0.38 +0.1 5,996,872 + BT4576 0.40 -0.0 5,996,873 - BT4576 0.40 -0.6 5,996,929 + BT4576 0.46 -0.0 5,996,958 + BT4576 0.50 +1.4 5,997,032 - BT4576 0.59 +0.1 5,997,039 - BT4576 0.59 -1.9 5,997,082 + BT4576 0.65 +2.4 5,997,083 - BT4576 0.65 -0.1 5,997,138 + BT4576 0.71 +0.4 5,997,194 - BT4576 0.78 -0.9 5,997,196 + BT4576 0.78 -0.9 5,997,197 - BT4576 0.78 -0.2 5,997,225 + BT4576 0.82 -2.2 5,997,269 + BT4576 0.87 +1.6 5,997,378 - -2.4 5,997,380 + -1.2 5,997,381 - +0.0 5,997,383 + -0.7 5,997,390 - +0.8 5,997,390 - -0.8 5,997,437 + -0.4 5,997,438 - +0.4 5,997,438 - +0.4 5,997,440 - -1.8 5,997,448 - +0.8 5,997,452 + -0.6 5,997,548 - -0.0 5,997,620 - -1.9 5,997,672 - -0.4
Or see this region's nucleotide sequence