Experiment: Post-colonization (Day 10) - Cage4;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT3296 and BT3297 are separated by 10 nucleotides BT3297 and BT3298 are separated by 20 nucleotides
BT3296: BT3296 - conserved hypothetical protein, putative outer membrane protein (NCBI ptt file), at 4,222,532 to 4,224,556
BT3296
BT3297: BT3297 - putative outer membrane protein, probably involved in nutrient binding (NCBI ptt file), at 4,224,567 to 4,227,647
BT3297
BT3298: BT3298 - conserved hypothetical protein, with a conserved domain (NCBI ptt file), at 4,227,668 to 4,229,080
BT3298
Position (kb) 4224
4225
4226
4227
4228 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4223.571 kb on + strand, within BT3296 at 4223.647 kb on + strand, within BT3296 at 4223.666 kb on - strand, within BT3296 at 4223.695 kb on + strand, within BT3296 at 4223.695 kb on + strand, within BT3296 at 4223.696 kb on - strand, within BT3296 at 4223.696 kb on - strand, within BT3296 at 4223.724 kb on - strand, within BT3296 at 4223.867 kb on + strand, within BT3296 at 4223.870 kb on + strand, within BT3296 at 4223.886 kb on - strand, within BT3296 at 4223.963 kb on + strand, within BT3296 at 4223.964 kb on - strand, within BT3296 at 4224.000 kb on + strand, within BT3296 at 4224.004 kb on + strand, within BT3296 at 4224.005 kb on - strand, within BT3296 at 4224.029 kb on - strand, within BT3296 at 4224.031 kb on - strand, within BT3296 at 4224.031 kb on - strand, within BT3296 at 4224.031 kb on - strand, within BT3296 at 4224.044 kb on - strand, within BT3296 at 4224.092 kb on + strand, within BT3296 at 4224.093 kb on - strand, within BT3296 at 4224.095 kb on + strand, within BT3296 at 4224.095 kb on + strand, within BT3296 at 4224.103 kb on - strand, within BT3296 at 4224.175 kb on + strand, within BT3296 at 4224.175 kb on + strand, within BT3296 at 4224.176 kb on - strand, within BT3296 at 4224.210 kb on - strand, within BT3296 at 4224.219 kb on + strand, within BT3296 at 4224.258 kb on + strand, within BT3296 at 4224.288 kb on - strand, within BT3296 at 4224.317 kb on - strand, within BT3296 at 4224.477 kb on - strand at 4224.481 kb on - strand at 4224.537 kb on - strand at 4224.539 kb on + strand at 4224.540 kb on - strand at 4224.541 kb on + strand at 4224.572 kb on + strand at 4224.596 kb on - strand at 4224.596 kb on - strand at 4224.712 kb on - strand at 4224.741 kb on + strand at 4224.746 kb on + strand at 4224.746 kb on + strand at 4224.747 kb on - strand at 4224.815 kb on - strand at 4224.818 kb on + strand at 4224.818 kb on + strand at 4224.818 kb on + strand at 4224.819 kb on - strand at 4224.851 kb on - strand at 4224.851 kb on - strand at 4224.912 kb on + strand, within BT3297 at 4224.948 kb on + strand, within BT3297 at 4224.949 kb on - strand, within BT3297 at 4224.949 kb on - strand, within BT3297 at 4225.004 kb on + strand, within BT3297 at 4225.005 kb on - strand, within BT3297 at 4225.045 kb on + strand, within BT3297 at 4225.068 kb on - strand, within BT3297 at 4225.084 kb on - strand, within BT3297 at 4225.084 kb on - strand, within BT3297 at 4225.084 kb on - strand, within BT3297 at 4225.085 kb on + strand, within BT3297 at 4225.098 kb on + strand, within BT3297 at 4225.099 kb on - strand, within BT3297 at 4225.133 kb on + strand, within BT3297 at 4225.146 kb on + strand, within BT3297 at 4225.147 kb on - strand, within BT3297 at 4225.147 kb on - strand, within BT3297 at 4225.147 kb on - strand, within BT3297 at 4225.189 kb on + strand, within BT3297 at 4225.259 kb on - strand, within BT3297 at 4225.259 kb on - strand, within BT3297 at 4225.274 kb on - strand, within BT3297 at 4225.517 kb on + strand, within BT3297 at 4225.563 kb on + strand, within BT3297 at 4225.592 kb on - strand, within BT3297 at 4225.670 kb on + strand, within BT3297 at 4225.671 kb on - strand, within BT3297 at 4225.671 kb on - strand, within BT3297 at 4225.675 kb on - strand, within BT3297 at 4225.675 kb on - strand, within BT3297 at 4225.730 kb on - strand, within BT3297 at 4225.751 kb on + strand, within BT3297 at 4225.781 kb on + strand, within BT3297 at 4225.868 kb on - strand, within BT3297 at 4225.943 kb on + strand, within BT3297 at 4225.949 kb on + strand, within BT3297 at 4225.959 kb on - strand, within BT3297 at 4225.961 kb on + strand, within BT3297 at 4225.962 kb on - strand, within BT3297 at 4225.983 kb on - strand, within BT3297 at 4225.986 kb on + strand, within BT3297 at 4225.986 kb on + strand, within BT3297 at 4225.987 kb on - strand, within BT3297 at 4225.987 kb on - strand, within BT3297 at 4226.013 kb on + strand, within BT3297 at 4226.042 kb on + strand, within BT3297 at 4226.068 kb on - strand, within BT3297 at 4226.071 kb on + strand, within BT3297 at 4226.071 kb on + strand, within BT3297 at 4226.071 kb on + strand, within BT3297 at 4226.072 kb on - strand, within BT3297 at 4226.112 kb on + strand, within BT3297 at 4226.112 kb on + strand, within BT3297 at 4226.143 kb on - strand, within BT3297 at 4226.143 kb on - strand, within BT3297 at 4226.215 kb on + strand, within BT3297 at 4226.215 kb on + strand, within BT3297 at 4226.215 kb on + strand, within BT3297 at 4226.407 kb on + strand, within BT3297 at 4226.408 kb on - strand, within BT3297 at 4226.518 kb on - strand, within BT3297 at 4226.540 kb on + strand, within BT3297 at 4226.541 kb on - strand, within BT3297 at 4226.599 kb on - strand, within BT3297 at 4226.617 kb on + strand, within BT3297 at 4226.621 kb on + strand, within BT3297 at 4226.642 kb on + strand, within BT3297 at 4226.649 kb on + strand, within BT3297 at 4226.649 kb on + strand, within BT3297 at 4226.654 kb on - strand, within BT3297 at 4226.654 kb on - strand, within BT3297 at 4226.654 kb on - strand, within BT3297 at 4226.728 kb on - strand, within BT3297 at 4226.753 kb on - strand, within BT3297 at 4226.755 kb on - strand, within BT3297 at 4226.781 kb on + strand, within BT3297 at 4226.787 kb on + strand, within BT3297 at 4226.825 kb on + strand, within BT3297 at 4226.826 kb on - strand, within BT3297 at 4226.845 kb on - strand, within BT3297 at 4226.855 kb on - strand, within BT3297 at 4226.858 kb on + strand, within BT3297 at 4226.858 kb on + strand, within BT3297 at 4226.858 kb on + strand, within BT3297 at 4226.859 kb on - strand, within BT3297 at 4226.882 kb on + strand, within BT3297 at 4226.882 kb on + strand, within BT3297 at 4226.884 kb on + strand, within BT3297 at 4226.884 kb on + strand, within BT3297 at 4226.885 kb on - strand, within BT3297 at 4226.885 kb on - strand, within BT3297 at 4226.885 kb on - strand, within BT3297 at 4226.889 kb on - strand, within BT3297 at 4226.899 kb on + strand, within BT3297 at 4226.954 kb on + strand, within BT3297 at 4226.957 kb on + strand, within BT3297 at 4226.995 kb on - strand, within BT3297 at 4227.019 kb on - strand, within BT3297 at 4227.026 kb on + strand, within BT3297 at 4227.027 kb on - strand, within BT3297 at 4227.090 kb on + strand, within BT3297 at 4227.144 kb on + strand, within BT3297 at 4227.146 kb on + strand, within BT3297 at 4227.146 kb on + strand, within BT3297 at 4227.146 kb on + strand, within BT3297 at 4227.146 kb on + strand, within BT3297 at 4227.147 kb on - strand, within BT3297 at 4227.186 kb on - strand, within BT3297 at 4227.193 kb on - strand, within BT3297 at 4227.193 kb on - strand, within BT3297 at 4227.197 kb on + strand, within BT3297 at 4227.215 kb on + strand, within BT3297 at 4227.243 kb on - strand, within BT3297 at 4227.246 kb on + strand, within BT3297 at 4227.247 kb on - strand, within BT3297 at 4227.308 kb on + strand, within BT3297 at 4227.347 kb on + strand at 4227.374 kb on + strand at 4227.415 kb on - strand at 4227.470 kb on + strand at 4227.471 kb on - strand at 4227.508 kb on - strand at 4227.612 kb on - strand at 4227.664 kb on + strand at 4227.669 kb on + strand at 4227.669 kb on + strand at 4227.714 kb on - strand at 4227.717 kb on + strand at 4227.825 kb on - strand, within BT3298 at 4227.825 kb on - strand, within BT3298 at 4227.830 kb on - strand, within BT3298 at 4227.939 kb on - strand, within BT3298 at 4227.998 kb on - strand, within BT3298 at 4228.111 kb on + strand, within BT3298 at 4228.112 kb on - strand, within BT3298 at 4228.114 kb on + strand, within BT3298 at 4228.116 kb on + strand, within BT3298 at 4228.117 kb on - strand, within BT3298 at 4228.121 kb on - strand, within BT3298 at 4228.121 kb on - strand, within BT3298 at 4228.122 kb on + strand, within BT3298 at 4228.122 kb on + strand, within BT3298 at 4228.123 kb on - strand, within BT3298 at 4228.123 kb on - strand, within BT3298 at 4228.126 kb on + strand, within BT3298 at 4228.139 kb on + strand, within BT3298 at 4228.174 kb on - strand, within BT3298 at 4228.263 kb on + strand, within BT3298 at 4228.298 kb on - strand, within BT3298 at 4228.298 kb on - strand, within BT3298 at 4228.307 kb on - strand, within BT3298 at 4228.320 kb on + strand, within BT3298 at 4228.320 kb on + strand, within BT3298 at 4228.359 kb on + strand, within BT3298 at 4228.385 kb on - strand, within BT3298 at 4228.443 kb on + strand, within BT3298 at 4228.443 kb on + strand, within BT3298 at 4228.444 kb on - strand at 4228.444 kb on - strand, within BT3298 at 4228.447 kb on - strand, within BT3298 at 4228.447 kb on - strand, within BT3298 at 4228.447 kb on - strand, within BT3298 at 4228.450 kb on + strand, within BT3298 at 4228.481 kb on - strand, within BT3298 at 4228.490 kb on + strand, within BT3298 at 4228.523 kb on - strand, within BT3298 at 4228.578 kb on - strand, within BT3298 at 4228.626 kb on - strand, within BT3298
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 10) - Cage4;Mouse1 remove 4,223,571 + BT3296 0.51 -0.0 4,223,647 + BT3296 0.55 -2.3 4,223,666 - BT3296 0.56 -1.1 4,223,695 + BT3296 0.57 -0.3 4,223,695 + BT3296 0.57 +0.6 4,223,696 - BT3296 0.57 -0.1 4,223,696 - BT3296 0.57 -1.2 4,223,724 - BT3296 0.59 -0.2 4,223,867 + BT3296 0.66 +0.2 4,223,870 + BT3296 0.66 -1.7 4,223,886 - BT3296 0.67 -0.9 4,223,963 + BT3296 0.71 -0.2 4,223,964 - BT3296 0.71 +0.1 4,224,000 + BT3296 0.72 -0.5 4,224,004 + BT3296 0.73 -0.3 4,224,005 - BT3296 0.73 -3.0 4,224,029 - BT3296 0.74 +0.6 4,224,031 - BT3296 0.74 -1.8 4,224,031 - BT3296 0.74 +2.1 4,224,031 - BT3296 0.74 +0.7 4,224,044 - BT3296 0.75 -2.4 4,224,092 + BT3296 0.77 -0.1 4,224,093 - BT3296 0.77 -1.3 4,224,095 + BT3296 0.77 +0.5 4,224,095 + BT3296 0.77 -1.6 4,224,103 - BT3296 0.78 +0.1 4,224,175 + BT3296 0.81 -0.8 4,224,175 + BT3296 0.81 +1.1 4,224,176 - BT3296 0.81 -1.5 4,224,210 - BT3296 0.83 -0.3 4,224,219 + BT3296 0.83 -0.9 4,224,258 + BT3296 0.85 -2.8 4,224,288 - BT3296 0.87 +0.1 4,224,317 - BT3296 0.88 -2.5 4,224,477 - -0.9 4,224,481 - -0.9 4,224,537 - -0.5 4,224,539 + -2.1 4,224,540 - +0.5 4,224,541 + -1.9 4,224,572 + -0.3 4,224,596 - -0.4 4,224,596 - -0.5 4,224,712 - -1.4 4,224,741 + +0.1 4,224,746 + -0.5 4,224,746 + +0.1 4,224,747 - -0.6 4,224,815 - -0.9 4,224,818 + -0.3 4,224,818 + +0.1 4,224,818 + -0.7 4,224,819 - +0.2 4,224,851 - +0.1 4,224,851 - -1.9 4,224,912 + BT3297 0.11 +1.1 4,224,948 + BT3297 0.12 -1.2 4,224,949 - BT3297 0.12 -0.7 4,224,949 - BT3297 0.12 +0.1 4,225,004 + BT3297 0.14 +1.1 4,225,005 - BT3297 0.14 +1.7 4,225,045 + BT3297 0.16 +1.9 4,225,068 - BT3297 0.16 +1.8 4,225,084 - BT3297 0.17 +2.4 4,225,084 - BT3297 0.17 +1.3 4,225,084 - BT3297 0.17 -1.9 4,225,085 + BT3297 0.17 -0.5 4,225,098 + BT3297 0.17 +1.3 4,225,099 - BT3297 0.17 -0.5 4,225,133 + BT3297 0.18 -0.7 4,225,146 + BT3297 0.19 -0.5 4,225,147 - BT3297 0.19 -0.8 4,225,147 - BT3297 0.19 +0.8 4,225,147 - BT3297 0.19 -0.3 4,225,189 + BT3297 0.20 -0.2 4,225,259 - BT3297 0.22 -0.7 4,225,259 - BT3297 0.22 +0.3 4,225,274 - BT3297 0.23 +0.3 4,225,517 + BT3297 0.31 -0.4 4,225,563 + BT3297 0.32 -0.9 4,225,592 - BT3297 0.33 +1.1 4,225,670 + BT3297 0.36 -0.7 4,225,671 - BT3297 0.36 -0.7 4,225,671 - BT3297 0.36 -0.5 4,225,675 - BT3297 0.36 -0.2 4,225,675 - BT3297 0.36 -0.9 4,225,730 - BT3297 0.38 -0.7 4,225,751 + BT3297 0.38 -1.1 4,225,781 + BT3297 0.39 -2.6 4,225,868 - BT3297 0.42 -1.9 4,225,943 + BT3297 0.45 -0.5 4,225,949 + BT3297 0.45 -1.3 4,225,959 - BT3297 0.45 -0.1 4,225,961 + BT3297 0.45 -0.8 4,225,962 - BT3297 0.45 -1.6 4,225,983 - BT3297 0.46 -2.0 4,225,986 + BT3297 0.46 -2.3 4,225,986 + BT3297 0.46 -1.7 4,225,987 - BT3297 0.46 -1.7 4,225,987 - BT3297 0.46 -2.2 4,226,013 + BT3297 0.47 -0.7 4,226,042 + BT3297 0.48 -1.5 4,226,068 - BT3297 0.49 -1.3 4,226,071 + BT3297 0.49 -0.7 4,226,071 + BT3297 0.49 -1.3 4,226,071 + BT3297 0.49 -2.3 4,226,072 - BT3297 0.49 -1.3 4,226,112 + BT3297 0.50 -0.1 4,226,112 + BT3297 0.50 +0.1 4,226,143 - BT3297 0.51 -2.3 4,226,143 - BT3297 0.51 -0.4 4,226,215 + BT3297 0.53 -0.5 4,226,215 + BT3297 0.53 -0.1 4,226,215 + BT3297 0.53 -1.0 4,226,407 + BT3297 0.60 -0.1 4,226,408 - BT3297 0.60 -3.1 4,226,518 - BT3297 0.63 -1.5 4,226,540 + BT3297 0.64 +0.1 4,226,541 - BT3297 0.64 -3.1 4,226,599 - BT3297 0.66 -0.5 4,226,617 + BT3297 0.67 +0.1 4,226,621 + BT3297 0.67 -0.0 4,226,642 + BT3297 0.67 -0.4 4,226,649 + BT3297 0.68 +1.0 4,226,649 + BT3297 0.68 +1.1 4,226,654 - BT3297 0.68 -1.4 4,226,654 - BT3297 0.68 +1.3 4,226,654 - BT3297 0.68 +0.1 4,226,728 - BT3297 0.70 -1.9 4,226,753 - BT3297 0.71 -0.7 4,226,755 - BT3297 0.71 -0.6 4,226,781 + BT3297 0.72 +0.1 4,226,787 + BT3297 0.72 -1.4 4,226,825 + BT3297 0.73 -0.5 4,226,826 - BT3297 0.73 +0.5 4,226,845 - BT3297 0.74 -1.1 4,226,855 - BT3297 0.74 -1.5 4,226,858 + BT3297 0.74 -0.7 4,226,858 + BT3297 0.74 -0.4 4,226,858 + BT3297 0.74 -1.6 4,226,859 - BT3297 0.74 -0.5 4,226,882 + BT3297 0.75 -1.7 4,226,882 + BT3297 0.75 -0.6 4,226,884 + BT3297 0.75 -1.5 4,226,884 + BT3297 0.75 -0.7 4,226,885 - BT3297 0.75 -1.0 4,226,885 - BT3297 0.75 -1.7 4,226,885 - BT3297 0.75 +0.2 4,226,889 - BT3297 0.75 +0.1 4,226,899 + BT3297 0.76 -1.3 4,226,954 + BT3297 0.77 -2.4 4,226,957 + BT3297 0.78 +0.6 4,226,995 - BT3297 0.79 +0.2 4,227,019 - BT3297 0.80 +0.4 4,227,026 + BT3297 0.80 -1.9 4,227,027 - BT3297 0.80 -0.9 4,227,090 + BT3297 0.82 -2.2 4,227,144 + BT3297 0.84 +0.3 4,227,146 + BT3297 0.84 -2.5 4,227,146 + BT3297 0.84 +1.1 4,227,146 + BT3297 0.84 +0.5 4,227,146 + BT3297 0.84 -0.1 4,227,147 - BT3297 0.84 -2.8 4,227,186 - BT3297 0.85 -1.9 4,227,193 - BT3297 0.85 -0.4 4,227,193 - BT3297 0.85 -0.5 4,227,197 + BT3297 0.85 -0.5 4,227,215 + BT3297 0.86 +0.1 4,227,243 - BT3297 0.87 -1.7 4,227,246 + BT3297 0.87 -1.7 4,227,247 - BT3297 0.87 -0.1 4,227,308 + BT3297 0.89 -0.5 4,227,347 + -0.5 4,227,374 + -1.4 4,227,415 - -1.5 4,227,470 + +0.2 4,227,471 - -0.2 4,227,508 - -2.4 4,227,612 - -0.9 4,227,664 + -0.9 4,227,669 + -0.9 4,227,669 + -1.7 4,227,714 - +0.9 4,227,717 + -0.3 4,227,825 - BT3298 0.11 -0.4 4,227,825 - BT3298 0.11 +0.5 4,227,830 - BT3298 0.11 +0.6 4,227,939 - BT3298 0.19 -1.3 4,227,998 - BT3298 0.23 -0.2 4,228,111 + BT3298 0.31 -0.5 4,228,112 - BT3298 0.31 +0.5 4,228,114 + BT3298 0.32 -1.1 4,228,116 + BT3298 0.32 +1.9 4,228,117 - BT3298 0.32 -1.5 4,228,121 - BT3298 0.32 -0.1 4,228,121 - BT3298 0.32 -0.5 4,228,122 + BT3298 0.32 -0.3 4,228,122 + BT3298 0.32 -3.4 4,228,123 - BT3298 0.32 +0.7 4,228,123 - BT3298 0.32 +0.1 4,228,126 + BT3298 0.32 +0.1 4,228,139 + BT3298 0.33 -1.3 4,228,174 - BT3298 0.36 -1.5 4,228,263 + BT3298 0.42 -2.8 4,228,298 - BT3298 0.45 -0.4 4,228,298 - BT3298 0.45 +0.7 4,228,307 - BT3298 0.45 +0.1 4,228,320 + BT3298 0.46 -0.3 4,228,320 + BT3298 0.46 -1.2 4,228,359 + BT3298 0.49 -0.9 4,228,385 - BT3298 0.51 -2.4 4,228,443 + BT3298 0.55 -1.1 4,228,443 + BT3298 0.55 +0.4 4,228,444 - -1.7 4,228,444 - BT3298 0.55 -0.3 4,228,447 - BT3298 0.55 -0.5 4,228,447 - BT3298 0.55 -1.1 4,228,447 - BT3298 0.55 -0.4 4,228,450 + BT3298 0.55 -0.9 4,228,481 - BT3298 0.58 +1.3 4,228,490 + BT3298 0.58 -1.1 4,228,523 - BT3298 0.61 -1.9 4,228,578 - BT3298 0.64 -0.6 4,228,626 - BT3298 0.68 -0.5
Or see this region's nucleotide sequence