Experiment: Post-colonization (Day 10) - Cage4;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0662 and BT0663 are separated by 16 nucleotides BT0663 and BT0664 are separated by 29 nucleotides BT0664 and BT0665 are separated by 8 nucleotides BT0665 and BT0666 overlap by 1 nucleotides
BT0662: BT0662 - hypothetical protein (NCBI ptt file), at 816,451 to 818,247
BT0662
BT0663: BT0663 - hypothetical protein (NCBI ptt file), at 818,264 to 818,710
BT0663
BT0664: BT0664 - hypothetical protein (NCBI ptt file), at 818,740 to 819,888
BT0664
BT0665: BT0665 - hypothetical protein (NCBI ptt file), at 819,897 to 820,535
BT0665
BT0666: BT0666 - hypothetical protein (NCBI ptt file), at 820,535 to 821,680
BT0666
Position (kb) 818
819
820 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 817.783 kb on + strand, within BT0662 at 817.788 kb on + strand, within BT0662 at 817.789 kb on - strand, within BT0662 at 817.847 kb on + strand, within BT0662 at 817.873 kb on - strand, within BT0662 at 817.932 kb on - strand, within BT0662 at 817.941 kb on - strand, within BT0662 at 817.978 kb on + strand, within BT0662 at 818.151 kb on + strand at 818.152 kb on - strand at 818.230 kb on - strand at 818.238 kb on + strand at 818.301 kb on + strand at 818.313 kb on + strand, within BT0663 at 818.399 kb on - strand, within BT0663 at 818.461 kb on + strand, within BT0663 at 818.462 kb on - strand, within BT0663 at 818.462 kb on - strand, within BT0663 at 818.489 kb on - strand, within BT0663 at 818.605 kb on + strand, within BT0663 at 818.606 kb on + strand, within BT0663 at 818.709 kb on - strand at 818.719 kb on - strand at 818.790 kb on - strand at 818.842 kb on - strand at 818.937 kb on - strand, within BT0664 at 819.061 kb on - strand, within BT0664 at 819.259 kb on - strand, within BT0664 at 819.309 kb on - strand, within BT0664 at 819.350 kb on - strand, within BT0664 at 819.429 kb on - strand, within BT0664 at 819.437 kb on - strand, within BT0664 at 819.474 kb on - strand, within BT0664 at 819.523 kb on - strand, within BT0664 at 819.545 kb on + strand, within BT0664 at 819.622 kb on + strand, within BT0664 at 819.689 kb on - strand, within BT0664 at 819.713 kb on - strand, within BT0664 at 819.742 kb on + strand, within BT0664 at 819.743 kb on - strand, within BT0664 at 819.743 kb on - strand, within BT0664 at 819.855 kb on + strand at 819.981 kb on - strand, within BT0665 at 820.034 kb on - strand, within BT0665 at 820.102 kb on - strand, within BT0665 at 820.123 kb on + strand, within BT0665 at 820.123 kb on + strand, within BT0665 at 820.123 kb on + strand, within BT0665 at 820.206 kb on - strand, within BT0665 at 820.349 kb on - strand, within BT0665 at 820.355 kb on - strand, within BT0665 at 820.404 kb on - strand, within BT0665 at 820.419 kb on - strand, within BT0665 at 820.584 kb on + strand at 820.589 kb on - strand at 820.645 kb on + strand at 820.657 kb on - strand, within BT0666 at 820.670 kb on + strand, within BT0666 at 820.758 kb on - strand, within BT0666 at 820.789 kb on - strand, within BT0666 at 820.790 kb on - strand, within BT0666 at 820.790 kb on - strand, within BT0666 at 820.794 kb on - strand, within BT0666 at 820.853 kb on + strand, within BT0666 at 820.854 kb on - strand, within BT0666 at 820.864 kb on - strand, within BT0666
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 10) - Cage4;Mouse1 remove 817,783 + BT0662 0.74 -0.9 817,788 + BT0662 0.74 -0.6 817,789 - BT0662 0.74 -0.6 817,847 + BT0662 0.78 -1.6 817,873 - BT0662 0.79 +1.0 817,932 - BT0662 0.82 +0.4 817,941 - BT0662 0.83 +1.7 817,978 + BT0662 0.85 -1.9 818,151 + +0.0 818,152 - -1.0 818,230 - -0.5 818,238 + +0.5 818,301 + +1.5 818,313 + BT0663 0.11 -2.5 818,399 - BT0663 0.30 -1.0 818,461 + BT0663 0.44 -2.7 818,462 - BT0663 0.44 -0.1 818,462 - BT0663 0.44 -1.5 818,489 - BT0663 0.50 -0.7 818,605 + BT0663 0.76 +1.0 818,606 + BT0663 0.77 +1.0 818,709 - -1.4 818,719 - -1.5 818,790 - -2.0 818,842 - -0.9 818,937 - BT0664 0.17 +1.0 819,061 - BT0664 0.28 +0.5 819,259 - BT0664 0.45 +0.5 819,309 - BT0664 0.50 +0.2 819,350 - BT0664 0.53 -2.9 819,429 - BT0664 0.60 -0.0 819,437 - BT0664 0.61 +0.5 819,474 - BT0664 0.64 -0.0 819,523 - BT0664 0.68 -0.4 819,545 + BT0664 0.70 -1.4 819,622 + BT0664 0.77 -0.9 819,689 - BT0664 0.83 +1.7 819,713 - BT0664 0.85 -2.5 819,742 + BT0664 0.87 +0.3 819,743 - BT0664 0.87 +1.5 819,743 - BT0664 0.87 -0.6 819,855 + +1.0 819,981 - BT0665 0.13 -1.5 820,034 - BT0665 0.21 +1.0 820,102 - BT0665 0.32 -0.9 820,123 + BT0665 0.35 -0.6 820,123 + BT0665 0.35 +0.2 820,123 + BT0665 0.35 -0.5 820,206 - BT0665 0.48 -0.5 820,349 - BT0665 0.71 -0.0 820,355 - BT0665 0.72 -1.4 820,404 - BT0665 0.79 -0.6 820,419 - BT0665 0.82 -0.5 820,584 + +0.4 820,589 - -0.0 820,645 + -1.0 820,657 - BT0666 0.11 -1.0 820,670 + BT0666 0.12 -0.2 820,758 - BT0666 0.19 +0.4 820,789 - BT0666 0.22 -0.6 820,790 - BT0666 0.22 +0.4 820,790 - BT0666 0.22 -1.1 820,794 - BT0666 0.23 +0.2 820,853 + BT0666 0.28 -1.1 820,854 - BT0666 0.28 +0.1 820,864 - BT0666 0.29 -2.1
Or see this region's nucleotide sequence