Experiment: Post-colonization (Day 10) - Cage4;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0392 and BT0393 are separated by 1 nucleotides BT0393 and BT0394 are separated by 17 nucleotides BT0394 and BT0395 are separated by 170 nucleotides BT0395 and BT0396 are separated by 182 nucleotides
BT0392: BT0392 - lipopolysaccharide biosynthesis RfbU-related protein (NCBI ptt file), at 481,722 to 482,828
BT0392
BT0393: BT0393 - serine acetyltransferase (NCBI ptt file), at 482,830 to 483,435
BT0393
BT0394: BT0394 - capsular polysaccharide biosynthesis glycosyltransferase (NCBI ptt file), at 483,453 to 484,547
BT0394
BT0395: BT0395 - hypothetical protein (NCBI ptt file), at 484,718 to 484,945
BT0395
BT0396: BT0396 - putative UDP-GlcNAc:undecaprenylphosphate GlcNAc-1-phosphate transferase (NCBI ptt file), at 485,128 to 486,117
BT0396
Position (kb) 483
484
485 Strain fitness (log2 ratio) -2
-1
0
1
2 at 482.622 kb on - strand, within BT0392 at 483.014 kb on - strand, within BT0393 at 483.058 kb on - strand, within BT0393 at 483.109 kb on - strand, within BT0393 at 483.283 kb on - strand, within BT0393 at 483.289 kb on - strand, within BT0393 at 483.314 kb on + strand, within BT0393 at 483.556 kb on - strand at 483.668 kb on + strand, within BT0394 at 483.714 kb on - strand, within BT0394 at 483.728 kb on + strand, within BT0394 at 483.729 kb on - strand, within BT0394 at 483.740 kb on + strand, within BT0394 at 483.750 kb on - strand, within BT0394 at 483.754 kb on + strand, within BT0394 at 483.754 kb on + strand, within BT0394 at 483.831 kb on - strand, within BT0394 at 483.831 kb on - strand, within BT0394 at 483.855 kb on - strand, within BT0394 at 483.989 kb on - strand, within BT0394 at 483.989 kb on - strand, within BT0394 at 484.152 kb on - strand, within BT0394 at 484.281 kb on - strand, within BT0394 at 484.285 kb on + strand, within BT0394 at 484.521 kb on + strand at 484.678 kb on + strand at 484.701 kb on + strand at 484.776 kb on - strand, within BT0395 at 484.810 kb on - strand, within BT0395 at 484.814 kb on + strand, within BT0395 at 484.830 kb on + strand, within BT0395 at 484.831 kb on - strand, within BT0395 at 484.850 kb on - strand, within BT0395 at 484.870 kb on + strand, within BT0395 at 485.082 kb on - strand at 485.104 kb on - strand at 485.202 kb on + strand at 485.249 kb on + strand, within BT0396 at 485.339 kb on + strand, within BT0396 at 485.448 kb on + strand, within BT0396 at 485.477 kb on + strand, within BT0396 at 485.478 kb on - strand, within BT0396 at 485.480 kb on + strand, within BT0396 at 485.480 kb on + strand, within BT0396 at 485.498 kb on - strand, within BT0396 at 485.520 kb on - strand, within BT0396 at 485.526 kb on + strand, within BT0396
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 10) - Cage4;Mouse1 remove 482,622 - BT0392 0.81 +1.5 483,014 - BT0393 0.30 -2.2 483,058 - BT0393 0.38 +0.4 483,109 - BT0393 0.46 -2.6 483,283 - BT0393 0.75 -0.6 483,289 - BT0393 0.76 -0.9 483,314 + BT0393 0.80 -2.1 483,556 - +0.9 483,668 + BT0394 0.20 +0.2 483,714 - BT0394 0.24 -2.6 483,728 + BT0394 0.25 -1.1 483,729 - BT0394 0.25 -1.4 483,740 + BT0394 0.26 -2.2 483,750 - BT0394 0.27 -1.3 483,754 + BT0394 0.27 -1.4 483,754 + BT0394 0.27 +0.5 483,831 - BT0394 0.35 -1.6 483,831 - BT0394 0.35 -0.1 483,855 - BT0394 0.37 -1.6 483,989 - BT0394 0.49 -2.2 483,989 - BT0394 0.49 -1.1 484,152 - BT0394 0.64 -2.2 484,281 - BT0394 0.76 -1.2 484,285 + BT0394 0.76 -2.5 484,521 + -1.5 484,678 + +1.9 484,701 + -0.1 484,776 - BT0395 0.25 -1.4 484,810 - BT0395 0.40 -1.6 484,814 + BT0395 0.42 -1.4 484,830 + BT0395 0.49 -1.5 484,831 - BT0395 0.50 -0.6 484,850 - BT0395 0.58 -2.2 484,870 + BT0395 0.67 -0.3 485,082 - -1.9 485,104 - -1.4 485,202 + +0.9 485,249 + BT0396 0.12 -2.2 485,339 + BT0396 0.21 -0.9 485,448 + BT0396 0.32 +0.6 485,477 + BT0396 0.35 +1.4 485,478 - BT0396 0.35 -0.6 485,480 + BT0396 0.36 -0.6 485,480 + BT0396 0.36 -2.6 485,498 - BT0396 0.37 -0.2 485,520 - BT0396 0.40 -0.5 485,526 + BT0396 0.40 -1.4
Or see this region's nucleotide sequence