Experiment: Post-colonization (Day 8) - Cage6;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT4032 and BT4033 are separated by 226 nucleotides BT4033 and BT4034 are separated by 272 nucleotides BT4034 and BT4035 are separated by 309 nucleotides BT4035 and BT4036 are separated by 17 nucleotides
BT4032: BT4032 - conserved hypothetical protein, putative non-specific DNA-binding protein (NCBI ptt file), at 5,244,897 to 5,245,373
BT4032
BT4033: BT4033 - hypothetical protein (NCBI ptt file), at 5,245,600 to 5,246,088
BT4033
BT4034: BT4034 - hypothetical protein (NCBI ptt file), at 5,246,361 to 5,246,783
BT4034
BT4035: BT4035 - hypothetical protein (NCBI ptt file), at 5,247,093 to 5,247,413
BT4035
BT4036: BT4036 - hypothetical protein (NCBI ptt file), at 5,247,431 to 5,247,979
BT4036
Position (kb) 5246
5247 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5245.391 kb on + strand at 5245.491 kb on - strand at 5245.576 kb on + strand at 5245.577 kb on - strand at 5245.579 kb on - strand at 5245.579 kb on - strand at 5245.579 kb on - strand at 5245.623 kb on + strand at 5245.624 kb on - strand at 5245.624 kb on - strand at 5245.654 kb on - strand, within BT4033 at 5245.658 kb on - strand, within BT4033 at 5245.687 kb on - strand, within BT4033 at 5245.782 kb on + strand, within BT4033 at 5245.835 kb on + strand, within BT4033 at 5245.860 kb on - strand, within BT4033 at 5246.075 kb on + strand at 5246.118 kb on + strand at 5246.180 kb on - strand at 5246.218 kb on + strand at 5246.409 kb on - strand, within BT4034 at 5246.518 kb on + strand, within BT4034 at 5246.518 kb on + strand, within BT4034 at 5246.518 kb on + strand, within BT4034 at 5246.640 kb on + strand, within BT4034 at 5246.641 kb on - strand, within BT4034 at 5246.652 kb on - strand, within BT4034 at 5246.695 kb on - strand, within BT4034 at 5246.971 kb on - strand at 5247.022 kb on - strand at 5247.074 kb on - strand at 5247.074 kb on - strand at 5247.094 kb on + strand at 5247.429 kb on - strand at 5247.429 kb on - strand at 5247.446 kb on - strand at 5247.446 kb on - strand at 5247.533 kb on - strand, within BT4036 at 5247.611 kb on - strand, within BT4036 at 5247.743 kb on + strand, within BT4036
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 8) - Cage6;Mouse2 remove 5,245,391 + +0.5 5,245,491 - -2.1 5,245,576 + -1.1 5,245,577 - +0.2 5,245,579 - +0.4 5,245,579 - -0.2 5,245,579 - -1.1 5,245,623 + -0.0 5,245,624 - -3.1 5,245,624 - +1.3 5,245,654 - BT4033 0.11 -0.8 5,245,658 - BT4033 0.12 -3.0 5,245,687 - BT4033 0.18 +2.0 5,245,782 + BT4033 0.37 +0.2 5,245,835 + BT4033 0.48 +0.5 5,245,860 - BT4033 0.53 -0.8 5,246,075 + -1.1 5,246,118 + +0.4 5,246,180 - -2.3 5,246,218 + -1.4 5,246,409 - BT4034 0.11 -1.2 5,246,518 + BT4034 0.37 -3.0 5,246,518 + BT4034 0.37 -1.9 5,246,518 + BT4034 0.37 -0.1 5,246,640 + BT4034 0.66 -1.3 5,246,641 - BT4034 0.66 +0.9 5,246,652 - BT4034 0.69 +0.9 5,246,695 - BT4034 0.79 -1.6 5,246,971 - -1.6 5,247,022 - -1.0 5,247,074 - -0.4 5,247,074 - +1.5 5,247,094 + -0.2 5,247,429 - -0.1 5,247,429 - -1.1 5,247,446 - +0.9 5,247,446 - +1.6 5,247,533 - BT4036 0.19 -0.4 5,247,611 - BT4036 0.33 +0.6 5,247,743 + BT4036 0.57 -3.3
Or see this region's nucleotide sequence