Experiment: Post-colonization (Day 8) - Cage6;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT2843 and BT2844 are separated by 168 nucleotides BT2844 and BT2845 are separated by 112 nucleotides
BT2843: BT2843 - integrase (NCBI ptt file), at 3,545,118 to 3,546,077
BT2843
BT2844: BT2844 - conserved hypothetical protein (NCBI ptt file), at 3,546,246 to 3,547,907
BT2844
BT2845: BT2845 - conserved hypothetical protein (NCBI ptt file), at 3,548,020 to 3,549,135
BT2845
Position (kb)
3546
3547
3548 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3545.293 kb on + strand, within BT2843 at 3545.555 kb on + strand, within BT2843 at 3545.811 kb on - strand, within BT2843 at 3545.822 kb on + strand, within BT2843 at 3545.828 kb on - strand, within BT2843 at 3546.045 kb on + strand at 3546.046 kb on - strand at 3546.099 kb on + strand at 3546.104 kb on - strand at 3546.108 kb on - strand at 3546.168 kb on + strand at 3546.170 kb on + strand at 3546.171 kb on - strand at 3546.171 kb on - strand at 3546.182 kb on + strand at 3546.183 kb on - strand at 3546.191 kb on + strand at 3546.202 kb on - strand at 3546.212 kb on + strand at 3546.241 kb on + strand at 3546.242 kb on - strand at 3546.306 kb on + strand at 3546.340 kb on + strand at 3546.410 kb on - strand at 3546.504 kb on - strand, within BT2844 at 3546.511 kb on - strand, within BT2844 at 3546.511 kb on - strand, within BT2844 at 3546.524 kb on + strand, within BT2844 at 3546.524 kb on + strand, within BT2844 at 3546.525 kb on - strand, within BT2844 at 3546.525 kb on - strand, within BT2844 at 3546.599 kb on + strand, within BT2844 at 3546.653 kb on - strand, within BT2844 at 3546.653 kb on - strand, within BT2844 at 3546.653 kb on - strand, within BT2844 at 3546.728 kb on + strand, within BT2844 at 3546.728 kb on + strand, within BT2844 at 3546.728 kb on + strand, within BT2844 at 3546.729 kb on - strand, within BT2844 at 3546.752 kb on + strand, within BT2844 at 3546.753 kb on - strand, within BT2844 at 3546.838 kb on + strand, within BT2844 at 3546.907 kb on + strand, within BT2844 at 3546.908 kb on - strand, within BT2844 at 3547.008 kb on - strand, within BT2844 at 3547.011 kb on + strand, within BT2844 at 3547.011 kb on + strand, within BT2844 at 3547.013 kb on + strand, within BT2844 at 3547.058 kb on + strand, within BT2844 at 3547.153 kb on - strand, within BT2844 at 3547.262 kb on + strand, within BT2844 at 3547.296 kb on + strand, within BT2844 at 3547.304 kb on + strand, within BT2844 at 3547.305 kb on - strand, within BT2844 at 3547.337 kb on + strand, within BT2844 at 3547.337 kb on + strand, within BT2844 at 3547.337 kb on + strand, within BT2844 at 3547.338 kb on - strand, within BT2844 at 3547.341 kb on + strand, within BT2844 at 3547.384 kb on - strand, within BT2844 at 3547.384 kb on - strand, within BT2844 at 3547.441 kb on - strand, within BT2844 at 3547.492 kb on + strand, within BT2844 at 3547.580 kb on + strand, within BT2844 at 3547.593 kb on + strand, within BT2844 at 3547.717 kb on + strand, within BT2844 at 3547.734 kb on + strand, within BT2844 at 3547.735 kb on - strand, within BT2844 at 3547.760 kb on - strand at 3547.905 kb on + strand at 3548.039 kb on + strand at 3548.127 kb on + strand at 3548.128 kb on - strand at 3548.128 kb on - strand at 3548.203 kb on + strand, within BT2845 at 3548.208 kb on + strand, within BT2845 at 3548.220 kb on + strand, within BT2845 at 3548.237 kb on - strand, within BT2845 at 3548.310 kb on + strand, within BT2845 at 3548.346 kb on + strand, within BT2845 at 3548.346 kb on + strand, within BT2845 at 3548.351 kb on - strand, within BT2845 at 3548.351 kb on - strand, within BT2845 at 3548.434 kb on - strand, within BT2845 at 3548.489 kb on + strand, within BT2845 at 3548.522 kb on - strand, within BT2845 at 3548.621 kb on - strand, within BT2845 at 3548.677 kb on + strand, within BT2845 at 3548.677 kb on + strand, within BT2845 at 3548.678 kb on - strand, within BT2845 at 3548.678 kb on - strand, within BT2845 at 3548.855 kb on - strand, within BT2845 at 3548.859 kb on - strand, within BT2845 at 3548.859 kb on - strand, within BT2845 at 3548.885 kb on + strand, within BT2845 at 3548.886 kb on - strand, within BT2845
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 8) - Cage6;Mouse2 remove 3,545,293 + BT2843 0.18 -2.3 3,545,555 + BT2843 0.46 -1.5 3,545,811 - BT2843 0.72 -1.5 3,545,822 + BT2843 0.73 -3.6 3,545,828 - BT2843 0.74 -2.9 3,546,045 + -3.0 3,546,046 - -0.2 3,546,099 + -1.7 3,546,104 - -0.8 3,546,108 - -0.3 3,546,168 + -0.7 3,546,170 + -2.0 3,546,171 - +0.8 3,546,171 - -0.7 3,546,182 + +0.8 3,546,183 - +0.8 3,546,191 + -0.2 3,546,202 - -1.7 3,546,212 + -0.9 3,546,241 + -2.9 3,546,242 - +0.8 3,546,306 + -1.6 3,546,340 + -2.2 3,546,410 - -1.1 3,546,504 - BT2844 0.16 -0.2 3,546,511 - BT2844 0.16 -2.5 3,546,511 - BT2844 0.16 -2.0 3,546,524 + BT2844 0.17 -2.3 3,546,524 + BT2844 0.17 -0.8 3,546,525 - BT2844 0.17 -1.4 3,546,525 - BT2844 0.17 -1.5 3,546,599 + BT2844 0.21 -1.5 3,546,653 - BT2844 0.24 +0.8 3,546,653 - BT2844 0.24 -1.7 3,546,653 - BT2844 0.24 -1.2 3,546,728 + BT2844 0.29 -2.5 3,546,728 + BT2844 0.29 -0.2 3,546,728 + BT2844 0.29 +0.3 3,546,729 - BT2844 0.29 -1.7 3,546,752 + BT2844 0.30 +1.3 3,546,753 - BT2844 0.31 -1.5 3,546,838 + BT2844 0.36 -1.0 3,546,907 + BT2844 0.40 -0.3 3,546,908 - BT2844 0.40 -1.5 3,547,008 - BT2844 0.46 -2.0 3,547,011 + BT2844 0.46 -1.7 3,547,011 + BT2844 0.46 -1.3 3,547,013 + BT2844 0.46 -2.5 3,547,058 + BT2844 0.49 -1.5 3,547,153 - BT2844 0.55 +0.0 3,547,262 + BT2844 0.61 -2.0 3,547,296 + BT2844 0.63 -1.7 3,547,304 + BT2844 0.64 -2.2 3,547,305 - BT2844 0.64 -3.2 3,547,337 + BT2844 0.66 -1.9 3,547,337 + BT2844 0.66 +0.8 3,547,337 + BT2844 0.66 +0.8 3,547,338 - BT2844 0.66 -0.4 3,547,341 + BT2844 0.66 -0.3 3,547,384 - BT2844 0.68 -2.6 3,547,384 - BT2844 0.68 +0.8 3,547,441 - BT2844 0.72 -1.2 3,547,492 + BT2844 0.75 -3.4 3,547,580 + BT2844 0.80 -2.0 3,547,593 + BT2844 0.81 -3.6 3,547,717 + BT2844 0.89 -3.0 3,547,734 + BT2844 0.90 -1.2 3,547,735 - BT2844 0.90 +1.3 3,547,760 - -1.5 3,547,905 + -2.9 3,548,039 + -1.5 3,548,127 + -0.5 3,548,128 - -1.5 3,548,128 - +1.8 3,548,203 + BT2845 0.16 +0.4 3,548,208 + BT2845 0.17 -2.3 3,548,220 + BT2845 0.18 -0.9 3,548,237 - BT2845 0.19 -2.6 3,548,310 + BT2845 0.26 -1.4 3,548,346 + BT2845 0.29 -0.5 3,548,346 + BT2845 0.29 -2.2 3,548,351 - BT2845 0.30 +0.4 3,548,351 - BT2845 0.30 -1.7 3,548,434 - BT2845 0.37 +1.5 3,548,489 + BT2845 0.42 +0.1 3,548,522 - BT2845 0.45 -2.3 3,548,621 - BT2845 0.54 -0.4 3,548,677 + BT2845 0.59 -3.2 3,548,677 + BT2845 0.59 -0.7 3,548,678 - BT2845 0.59 -0.0 3,548,678 - BT2845 0.59 -1.7 3,548,855 - BT2845 0.75 -0.7 3,548,859 - BT2845 0.75 -0.2 3,548,859 - BT2845 0.75 +0.8 3,548,885 + BT2845 0.78 -0.1 3,548,886 - BT2845 0.78 -2.3
Or see this region's nucleotide sequence