Experiment: Post-colonization (Day 8) - Cage6;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0459 and BT0460 overlap by 1 nucleotides BT0460 and BT0461 are separated by 15 nucleotides
BT0459: BT0459 - beta-hexosaminidase precursor (NCBI ptt file), at 565,899 to 568,223
BT0459
BT0460: BT0460 - beta-hexosaminidase precursor (NCBI ptt file), at 568,223 to 570,298
BT0460
BT0461: BT0461 - beta-galactosidase (NCBI ptt file), at 570,314 to 572,833
BT0461
Position (kb) 568
569
570
571 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 567.270 kb on + strand, within BT0459 at 567.313 kb on - strand, within BT0459 at 567.317 kb on - strand, within BT0459 at 567.350 kb on + strand, within BT0459 at 567.375 kb on + strand, within BT0459 at 567.377 kb on + strand, within BT0459 at 567.432 kb on - strand, within BT0459 at 567.455 kb on - strand, within BT0459 at 567.477 kb on - strand, within BT0459 at 567.498 kb on + strand, within BT0459 at 567.560 kb on + strand, within BT0459 at 567.573 kb on - strand, within BT0459 at 567.578 kb on + strand, within BT0459 at 567.579 kb on - strand, within BT0459 at 567.648 kb on + strand, within BT0459 at 567.698 kb on + strand, within BT0459 at 567.903 kb on - strand, within BT0459 at 568.104 kb on - strand at 568.136 kb on - strand at 568.182 kb on + strand at 568.217 kb on + strand at 568.230 kb on + strand at 568.270 kb on - strand at 568.300 kb on + strand at 568.385 kb on - strand at 568.495 kb on - strand, within BT0460 at 568.559 kb on - strand, within BT0460 at 568.564 kb on + strand, within BT0460 at 568.627 kb on - strand, within BT0460 at 568.657 kb on - strand, within BT0460 at 568.672 kb on - strand, within BT0460 at 568.758 kb on + strand, within BT0460 at 568.834 kb on - strand, within BT0460 at 568.842 kb on - strand, within BT0460 at 568.956 kb on - strand, within BT0460 at 569.006 kb on - strand, within BT0460 at 569.052 kb on + strand, within BT0460 at 569.164 kb on - strand, within BT0460 at 569.188 kb on + strand, within BT0460 at 569.276 kb on - strand, within BT0460 at 569.290 kb on - strand, within BT0460 at 569.387 kb on - strand, within BT0460 at 569.393 kb on - strand, within BT0460 at 569.393 kb on - strand, within BT0460 at 569.393 kb on - strand, within BT0460 at 569.397 kb on + strand, within BT0460 at 569.425 kb on + strand, within BT0460 at 569.426 kb on - strand, within BT0460 at 569.481 kb on - strand, within BT0460 at 569.488 kb on + strand, within BT0460 at 569.534 kb on + strand, within BT0460 at 569.561 kb on + strand, within BT0460 at 569.673 kb on + strand, within BT0460 at 569.673 kb on + strand, within BT0460 at 569.676 kb on - strand, within BT0460 at 569.894 kb on - strand, within BT0460 at 569.938 kb on + strand, within BT0460 at 570.058 kb on + strand, within BT0460 at 570.070 kb on - strand, within BT0460 at 570.225 kb on - strand at 570.226 kb on + strand at 570.228 kb on + strand at 570.321 kb on + strand at 570.329 kb on - strand at 570.433 kb on + strand at 570.479 kb on + strand at 570.487 kb on - strand at 570.509 kb on + strand at 570.510 kb on - strand at 570.526 kb on - strand at 570.697 kb on + strand, within BT0461 at 570.697 kb on + strand, within BT0461 at 570.716 kb on + strand, within BT0461 at 570.718 kb on + strand, within BT0461 at 570.719 kb on - strand, within BT0461 at 570.756 kb on - strand, within BT0461 at 570.778 kb on - strand, within BT0461 at 570.814 kb on - strand, within BT0461 at 570.891 kb on + strand, within BT0461 at 571.100 kb on - strand, within BT0461 at 571.180 kb on + strand, within BT0461 at 571.187 kb on + strand, within BT0461 at 571.215 kb on - strand, within BT0461
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 8) - Cage6;Mouse2 remove 567,270 + BT0459 0.59 -1.4 567,313 - BT0459 0.61 -1.4 567,317 - BT0459 0.61 -0.7 567,350 + BT0459 0.62 -2.2 567,375 + BT0459 0.63 -2.4 567,377 + BT0459 0.64 -1.1 567,432 - BT0459 0.66 +0.2 567,455 - BT0459 0.67 +0.9 567,477 - BT0459 0.68 -1.9 567,498 + BT0459 0.69 -1.4 567,560 + BT0459 0.71 +0.9 567,573 - BT0459 0.72 +0.6 567,578 + BT0459 0.72 -1.9 567,579 - BT0459 0.72 -2.2 567,648 + BT0459 0.75 -1.7 567,698 + BT0459 0.77 +0.7 567,903 - BT0459 0.86 -0.7 568,104 - +1.2 568,136 - -0.9 568,182 + -2.2 568,217 + -2.4 568,230 + -1.1 568,270 - -0.7 568,300 + -0.7 568,385 - -0.1 568,495 - BT0460 0.13 +0.9 568,559 - BT0460 0.16 +0.1 568,564 + BT0460 0.16 -1.4 568,627 - BT0460 0.19 +2.1 568,657 - BT0460 0.21 -2.2 568,672 - BT0460 0.22 -0.4 568,758 + BT0460 0.26 -1.8 568,834 - BT0460 0.29 -0.2 568,842 - BT0460 0.30 -1.9 568,956 - BT0460 0.35 +0.5 569,006 - BT0460 0.38 -0.3 569,052 + BT0460 0.40 -3.3 569,164 - BT0460 0.45 +1.8 569,188 + BT0460 0.46 +2.2 569,276 - BT0460 0.51 -1.9 569,290 - BT0460 0.51 -1.1 569,387 - BT0460 0.56 -2.2 569,393 - BT0460 0.56 -0.7 569,393 - BT0460 0.56 +0.3 569,393 - BT0460 0.56 -2.4 569,397 + BT0460 0.57 +0.9 569,425 + BT0460 0.58 -0.7 569,426 - BT0460 0.58 -1.1 569,481 - BT0460 0.61 -1.1 569,488 + BT0460 0.61 -2.7 569,534 + BT0460 0.63 +0.2 569,561 + BT0460 0.64 -0.2 569,673 + BT0460 0.70 +1.2 569,673 + BT0460 0.70 -2.4 569,676 - BT0460 0.70 +0.0 569,894 - BT0460 0.80 +0.2 569,938 + BT0460 0.83 +1.5 570,058 + BT0460 0.88 -1.1 570,070 - BT0460 0.89 +0.1 570,225 - -2.0 570,226 + -1.4 570,228 + -0.1 570,321 + -0.7 570,329 - -1.4 570,433 + -0.1 570,479 + -0.7 570,487 - -4.1 570,509 + -0.5 570,510 - -1.9 570,526 - +0.2 570,697 + BT0461 0.15 -2.4 570,697 + BT0461 0.15 +1.5 570,716 + BT0461 0.16 -1.9 570,718 + BT0461 0.16 -0.5 570,719 - BT0461 0.16 -1.7 570,756 - BT0461 0.18 -0.1 570,778 - BT0461 0.18 +0.1 570,814 - BT0461 0.20 -1.9 570,891 + BT0461 0.23 -1.1 571,100 - BT0461 0.31 +0.1 571,180 + BT0461 0.34 -1.4 571,187 + BT0461 0.35 +1.7 571,215 - BT0461 0.36 -0.3
Or see this region's nucleotide sequence