Experiment: Post-colonization (Day 8) - Cage5;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0350 and BT0351 are separated by 189 nucleotides BT0351 and BT0352 are separated by 80 nucleotides BT0352 and BT0353 are separated by 36 nucleotides
BT0350: BT0350 - ribulokinase (EC 2.7.1.16) <small>(from data)</small>, at 421,849 to 423,444
BT0350
BT0351: BT0351 - L-arabinose isomerase (NCBI ptt file), at 423,634 to 425,163
BT0351
BT0352: BT0352 - conserved hypothetical protein (NCBI ptt file), at 425,244 to 425,606
BT0352
BT0353: BT0353 - putative sugar epimerase/aldolase (NCBI ptt file), at 425,643 to 426,326
BT0353
Position (kb) 423
424
425
426 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 422.651 kb on - strand, within BT0350 at 422.881 kb on + strand, within BT0350 at 422.881 kb on + strand, within BT0350 at 422.944 kb on + strand, within BT0350 at 422.949 kb on - strand, within BT0350 at 423.014 kb on + strand, within BT0350 at 423.015 kb on - strand, within BT0350 at 423.049 kb on - strand, within BT0350 at 423.059 kb on - strand, within BT0350 at 423.337 kb on - strand at 423.371 kb on - strand at 423.436 kb on + strand at 423.436 kb on + strand at 423.437 kb on - strand at 423.469 kb on + strand at 423.469 kb on + strand at 423.476 kb on - strand at 423.526 kb on + strand at 423.560 kb on + strand at 423.561 kb on - strand at 423.657 kb on + strand at 423.657 kb on + strand at 423.662 kb on + strand at 423.664 kb on + strand at 423.720 kb on + strand at 423.721 kb on - strand at 423.753 kb on - strand at 423.914 kb on - strand, within BT0351 at 423.914 kb on - strand, within BT0351 at 424.017 kb on + strand, within BT0351 at 424.024 kb on - strand, within BT0351 at 424.027 kb on + strand, within BT0351 at 424.028 kb on - strand, within BT0351 at 424.028 kb on - strand, within BT0351 at 424.092 kb on + strand, within BT0351 at 424.451 kb on + strand, within BT0351 at 424.468 kb on - strand, within BT0351 at 424.471 kb on + strand, within BT0351 at 424.484 kb on - strand, within BT0351 at 424.597 kb on + strand, within BT0351 at 424.603 kb on - strand, within BT0351 at 424.686 kb on + strand, within BT0351 at 424.755 kb on + strand, within BT0351 at 424.756 kb on - strand, within BT0351 at 424.989 kb on + strand, within BT0351 at 424.990 kb on - strand, within BT0351 at 425.013 kb on - strand at 425.022 kb on + strand at 425.068 kb on - strand at 425.125 kb on + strand at 425.142 kb on - strand at 425.169 kb on - strand at 425.271 kb on - strand at 425.338 kb on + strand, within BT0352 at 425.368 kb on + strand, within BT0352 at 425.397 kb on + strand, within BT0352 at 425.580 kb on + strand at 425.784 kb on + strand, within BT0353 at 425.785 kb on - strand, within BT0353 at 425.849 kb on + strand, within BT0353 at 425.881 kb on - strand, within BT0353 at 426.031 kb on + strand, within BT0353 at 426.035 kb on + strand, within BT0353 at 426.084 kb on + strand, within BT0353 at 426.085 kb on - strand, within BT0353 at 426.101 kb on + strand, within BT0353 at 426.102 kb on - strand, within BT0353
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 8) - Cage5;Mouse2 remove 422,651 - BT0350 0.50 -0.9 422,881 + BT0350 0.65 -3.2 422,881 + BT0350 0.65 -4.4 422,944 + BT0350 0.69 -2.6 422,949 - BT0350 0.69 -3.1 423,014 + BT0350 0.73 -0.5 423,015 - BT0350 0.73 -3.1 423,049 - BT0350 0.75 -1.3 423,059 - BT0350 0.76 -2.1 423,337 - -1.6 423,371 - -2.4 423,436 + -3.0 423,436 + -2.1 423,437 - +0.1 423,469 + -1.3 423,469 + -2.3 423,476 - -0.5 423,526 + +0.1 423,560 + -2.3 423,561 - -0.3 423,657 + -1.3 423,657 + -2.4 423,662 + +0.1 423,664 + -0.9 423,720 + -1.3 423,721 - -1.3 423,753 - -1.9 423,914 - BT0351 0.18 -2.6 423,914 - BT0351 0.18 -0.5 424,017 + BT0351 0.25 -0.5 424,024 - BT0351 0.25 -1.3 424,027 + BT0351 0.26 -2.8 424,028 - BT0351 0.26 -0.9 424,028 - BT0351 0.26 -2.6 424,092 + BT0351 0.30 -0.5 424,451 + BT0351 0.53 -0.5 424,468 - BT0351 0.55 -2.3 424,471 + BT0351 0.55 +0.1 424,484 - BT0351 0.56 +0.1 424,597 + BT0351 0.63 -0.5 424,603 - BT0351 0.63 -2.1 424,686 + BT0351 0.69 -2.7 424,755 + BT0351 0.73 -3.5 424,756 - BT0351 0.73 -2.8 424,989 + BT0351 0.89 -2.1 424,990 - BT0351 0.89 -3.3 425,013 - -1.9 425,022 + -3.9 425,068 - -2.3 425,125 + -1.3 425,142 - -2.4 425,169 - -0.8 425,271 - -1.5 425,338 + BT0352 0.26 -1.9 425,368 + BT0352 0.34 -2.9 425,397 + BT0352 0.42 -2.5 425,580 + -1.5 425,784 + BT0353 0.21 +0.1 425,785 - BT0353 0.21 -0.5 425,849 + BT0353 0.30 -2.5 425,881 - BT0353 0.35 -3.5 426,031 + BT0353 0.57 -3.6 426,035 + BT0353 0.57 -2.7 426,084 + BT0353 0.64 -2.6 426,085 - BT0353 0.65 -2.9 426,101 + BT0353 0.67 -3.4 426,102 - BT0353 0.67 -3.3
Or see this region's nucleotide sequence