Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2818

Experiment: Post-colonization (Day 8) - Cage3;Mouse4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 8) - Cage3;Mouse4
3,501,808	+		BT2817	0.68	-1.7
3,501,809	-		BT2817	0.68	-0.9
3,501,824	+		BT2817	0.69	+0.3
3,501,878	+		BT2817	0.72	+0.7
3,501,878	+		BT2817	0.72	-0.4
3,501,878	+		BT2817	0.72	-1.5
3,502,007	+		BT2817	0.80	-2.0
3,502,007	+		BT2817	0.80	-1.4
3,502,007	+		BT2817	0.80	+0.1
3,502,043	+		BT2817	0.82	-0.8
3,502,048	+		BT2817	0.82	-0.2
3,502,079	+		BT2817	0.84	-1.4
3,502,080	-		BT2817	0.84	+1.1
3,502,141	+		BT2817	0.87	-1.1
3,502,161	-		BT2817	0.89	-3.0
3,502,179	+		BT2817	0.90	-1.6
3,502,189	+				-1.7
3,502,229	+				+0.1
3,502,230	-				-2.0
3,502,231	+				-1.7
3,502,270	+				-1.0
3,502,273	+				-0.5
3,502,282	+				+0.3
3,502,295	+				-1.8
3,502,296	-				-1.7
3,502,298	+				-0.1
3,502,312	+				-0.9
3,502,341	+				-1.9
3,502,342	-				-0.9
3,502,367	-				-0.6
3,502,367	-				-0.1
3,502,413	+				-0.6
3,502,413	+				-1.1
3,502,443	-				-0.4
3,502,453	-				+0.3
3,502,498	+				-1.9
3,502,509	+				-0.9
3,502,553	-				-1.3
3,502,599	-				+0.4
3,502,622	-				-1.0
3,502,644	-				-1.7
3,502,644	-				-0.4
3,502,718	+				-1.4
3,502,719	-				-0.9
3,502,784	-				-1.1
3,502,811	+				-0.4
3,502,811	+				+1.6
3,502,811	+				-1.4
3,502,847	-				+0.1
3,502,847	-				-0.5
3,502,889	-				-1.6
3,502,889	-				-0.7
3,502,889	-				+0.6
3,502,946	-				-0.9
3,503,001	+				+0.2
3,503,001	+				-0.1
3,503,093	-		BT2818	0.11	+0.9
3,503,182	+		BT2818	0.14	+0.1
3,503,217	+		BT2818	0.15	-2.2
3,503,218	-		BT2818	0.15	+0.8
3,503,218	-		BT2818	0.15	-1.0
3,503,227	-		BT2818	0.15	+2.7
3,503,268	-		BT2818	0.16	+1.5
3,503,268	-		BT2818	0.16	-0.1
3,503,268	-		BT2818	0.16	+1.3
3,503,272	-		BT2818	0.17	-0.9
3,503,289	+		BT2818	0.17	-2.0
3,503,331	+		BT2818	0.18	-1.0
3,503,332	-		BT2818	0.18	-1.4
3,503,418	+		BT2818	0.21	-0.2
3,503,439	+		BT2818	0.22	-2.6
3,503,461	+		BT2818	0.23	+2.1
3,503,527	-		BT2818	0.25	-0.5
3,503,543	+		BT2818	0.25	+0.9
3,503,545	-		BT2818	0.25	-0.9
3,503,590	-		BT2818	0.27	+0.1
3,503,626	-		BT2818	0.28	-1.2
3,503,633	+		BT2818	0.28	+0.1
3,503,685	-		BT2818	0.30	-1.6
3,503,686	+		BT2818	0.30	-0.4
3,503,687	-		BT2818	0.30	+1.9
3,503,693	-		BT2818	0.30	-0.8
3,503,695	+		BT2818	0.30	+0.9
3,503,698	+		BT2818	0.30	-0.7
3,503,698	+		BT2818	0.30	-1.2
3,503,725	-		BT2818	0.31	-1.7
3,503,774	+		BT2818	0.32	+1.1
3,503,776	+		BT2818	0.32	-0.4
3,503,776	+		BT2818	0.32	+1.0
3,503,777	-		BT2818	0.33	+1.1
3,503,827	+		BT2818	0.34	-1.8
3,503,827	+		BT2818	0.34	+0.4
3,503,827	+		BT2818	0.34	+0.6
3,503,828	-		BT2818	0.34	-1.0
3,503,828	-		BT2818	0.34	+0.0
3,503,838	-		BT2818	0.34	-0.6
3,503,838	-		BT2818	0.34	-0.9
3,503,838	-		BT2818	0.34	-1.0
3,503,848	+		BT2818	0.35	+0.7
3,503,849	-		BT2818	0.35	-0.2
3,503,888	-		BT2818	0.36	+0.6
3,503,888	-		BT2818	0.36	-0.3
3,503,928	+		BT2818	0.37	-0.9
3,503,928	+		BT2818	0.37	-0.9
3,503,929	-		BT2818	0.37	+0.6
3,504,026	-		BT2818	0.40	-0.4
3,504,037	-		BT2818	0.41	+0.1
3,504,040	+		BT2818	0.41	+0.3
3,504,041	-		BT2818	0.41	-0.2
3,504,058	+		BT2818	0.41	+0.4
3,504,058	+		BT2818	0.41	-0.8
3,504,059	-		BT2818	0.41	+0.9
3,504,091	+		BT2818	0.42	-0.6
3,504,099	+		BT2818	0.43	+1.1
3,504,116	+		BT2818	0.43	-0.4
3,504,116	+		BT2818	0.43	-0.9
3,504,117	-		BT2818	0.43	+0.0
3,504,216	-		BT2818	0.46	-0.9
3,504,216	-		BT2818	0.46	-2.0
3,504,281	+		BT2818	0.48	+0.0
3,504,281	+		BT2818	0.48	-1.9
3,504,281	+		BT2818	0.48	-0.2
3,504,290	+		BT2818	0.49	-0.6
3,504,308	-		BT2818	0.49	-1.7
3,504,350	+		BT2818	0.51	-1.3
3,504,350	+		BT2818	0.51	-1.1
3,504,350	+		BT2818	0.51	-0.9
3,504,350	+		BT2818	0.51	-1.1
3,504,351	-		BT2818	0.51	-0.2
3,504,351	-		BT2818	0.51	-2.2
3,504,437	+		BT2818	0.53	-1.7
3,504,438	-		BT2818	0.53	+0.0
3,504,482	+		BT2818	0.55	+0.3
3,504,500	+		BT2818	0.55	-1.4
3,504,500	+		BT2818	0.55	+0.1
3,504,516	-		BT2818	0.56	+0.1
3,504,521	+		BT2818	0.56	-0.2
3,504,521	+		BT2818	0.56	-1.4
3,504,537	-		BT2818	0.56	+0.3
3,504,537	-		BT2818	0.56	-1.0
3,504,540	+		BT2818	0.57	+0.1
3,504,540	+		BT2818	0.57	-0.7
3,504,541	-		BT2818	0.57	-1.2
3,504,560	-		BT2818	0.57	+1.9
3,504,560	-		BT2818	0.57	-2.2
3,504,563	+		BT2818	0.57	+0.1
3,504,754	-		BT2818	0.63	-0.6
3,504,784	+		BT2818	0.64	-1.4
3,504,785	-		BT2818	0.64	-1.1
3,504,788	+		BT2818	0.64	-1.3
3,504,788	+		BT2818	0.64	+0.6
3,504,788	+		BT2818	0.64	-1.2
3,504,788	-		BT2818	0.64	-1.7
3,504,789	-		BT2818	0.64	-0.2
3,504,789	-		BT2818	0.64	+1.1
3,504,821	+		BT2818	0.65	+4.1
3,504,926	-		BT2818	0.69	-0.4
3,504,926	-		BT2818	0.69	-0.3
3,504,934	+		BT2818	0.69	-2.0
3,504,935	-		BT2818	0.69	-0.4
3,504,965	+		BT2818	0.70	-0.4
3,505,065	+		BT2818	0.73	-1.2
3,505,065	+		BT2818	0.73	-2.8
3,505,066	-		BT2818	0.73	-1.4
3,505,127	+		BT2818	0.75	-3.5
3,505,129	+		BT2818	0.75	+0.4
3,505,130	-		BT2818	0.75	-1.4
3,505,175	-		BT2818	0.77	-0.4
3,505,205	-		BT2818	0.78	-0.9
3,505,205	-		BT2818	0.78	-2.4
3,505,253	+		BT2818	0.79	-1.2
3,505,254	-		BT2818	0.79	+0.1
3,505,254	-		BT2818	0.79	-2.2
3,505,341	-		BT2818	0.82	+0.1
3,505,344	+		BT2818	0.82	-2.9
3,505,345	-		BT2818	0.82	-0.4
3,505,345	-		BT2818	0.82	-0.2
3,505,345	-		BT2818	0.82	+1.7
3,505,517	-		BT2818	0.87	-0.6
3,505,526	+		BT2818	0.88	-1.4
3,505,538	+		BT2818	0.88	-2.6
3,505,544	-		BT2818	0.88	-1.1
3,505,552	+		BT2818	0.88	-4.2
3,505,632	-				-1.2
3,505,887	+				-0.9
3,505,930	-				+0.1
3,505,930	-				-0.4
3,505,941	-				-1.2
3,505,944	-				+0.3
3,506,013	+				-2.0
3,506,052	+				-2.0
3,506,108	-		BT2819	0.10	+0.5
3,506,108	-		BT2819	0.10	+2.1
3,506,186	+		BT2819	0.15	-1.3
3,506,187	-		BT2819	0.15	-0.4
3,506,187	-		BT2819	0.15	-1.7
3,506,208	+		BT2819	0.16	-0.2
3,506,346	-		BT2819	0.24	-1.4
3,506,471	-		BT2819	0.31	-0.7
3,506,471	-		BT2819	0.31	-0.2
3,506,481	-		BT2819	0.31	+0.1
3,506,538	-		BT2819	0.35	+0.1
3,506,605	-		BT2819	0.38	-1.2
3,506,605	-		BT2819	0.38	-1.4
3,506,643	-		BT2819	0.41	+0.3
3,506,643	-		BT2819	0.41	+0.7
3,506,643	-		BT2819	0.41	-1.1
3,506,710	-		BT2819	0.44	-0.9
3,506,726	-		BT2819	0.45	+0.6
3,506,864	-		BT2819	0.53	-0.4
3,506,899	-		BT2819	0.55	-2.4