Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3107

Experiment: Post-colonization (Day 8) - Cage1;Mouse4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 8) - Cage1;Mouse4
3,951,199	-		BT3106	0.41	-2.2
3,951,208	-		BT3106	0.42	-0.9
3,951,231	+		BT3106	0.43	-0.6
3,951,232	-		BT3106	0.43	-0.4
3,951,253	+		BT3106	0.45	-0.4
3,951,275	-		BT3106	0.46	-2.4
3,951,336	+		BT3106	0.50	-2.4
3,951,337	-		BT3106	0.50	-1.6
3,951,370	-		BT3106	0.52	-1.3
3,951,392	+		BT3106	0.53	-0.2
3,951,416	+		BT3106	0.55	-1.8
3,951,431	-		BT3106	0.55	-1.4
3,951,434	+		BT3106	0.56	-0.8
3,951,479	+		BT3106	0.58	+0.4
3,951,480	-		BT3106	0.58	-0.8
3,951,490	+		BT3106	0.59	-2.0
3,951,537	+		BT3106	0.62	-2.4
3,951,563	+		BT3106	0.63	-0.9
3,951,564	-		BT3106	0.64	-2.3
3,951,741	-		BT3106	0.74	-1.6
3,951,755	-		BT3106	0.75	-1.7
3,951,759	+		BT3106	0.75	+1.2
3,951,771	-		BT3106	0.76	-1.2
3,951,790	+		BT3106	0.77	-0.2
3,951,790	+		BT3106	0.77	-3.4
3,951,904	+		BT3106	0.84	-1.2
3,951,954	-		BT3106	0.87	-1.4
3,951,966	+		BT3106	0.88	-0.0
3,951,966	+		BT3106	0.88	-0.2
3,951,996	+		BT3106	0.90	-0.4
3,951,998	+		BT3106	0.90	+0.2
3,952,002	-				-1.6
3,952,007	+				+1.2
3,952,008	-				-1.2
3,952,025	-				-1.1
3,952,060	-				-2.0
3,952,062	+				+0.3
3,952,062	+				-0.5
3,952,063	-				-1.0
3,952,063	-				-1.5
3,952,076	+				-0.2
3,952,105	-				-0.4
3,952,120	-				-0.5
3,952,151	-				-1.2
3,952,171	-				-2.2
3,952,172	+				-0.7
3,952,173	-				-1.1
3,952,245	+				-2.8
3,952,316	-				-1.6
3,952,318	-				-0.0
3,952,380	-		BT3107	0.13	-1.6
3,952,382	+		BT3107	0.13	-2.2
3,952,400	-		BT3107	0.14	-2.6
3,952,403	+		BT3107	0.14	+0.2
3,952,403	+		BT3107	0.14	-1.9
3,952,403	+		BT3107	0.14	-1.8
3,952,404	-		BT3107	0.14	-2.4
3,952,404	-		BT3107	0.14	-2.7
3,952,406	-		BT3107	0.14	-2.6
3,952,406	-		BT3107	0.14	-0.6
3,952,406	-		BT3107	0.14	+0.2
3,952,406	-		BT3107	0.14	+0.2
3,952,406	-		BT3107	0.14	-0.1
3,952,445	+		BT3107	0.17	-1.3
3,952,494	-		BT3107	0.20	-2.6
3,952,502	-		BT3107	0.20	+1.2
3,952,515	+		BT3107	0.21	-0.7
3,952,516	-		BT3107	0.21	+0.2
3,952,516	-		BT3107	0.21	-3.6
3,952,524	+		BT3107	0.21	-0.2
3,952,604	+		BT3107	0.26	+0.3
3,952,605	-		BT3107	0.26	+0.2
3,952,605	-		BT3107	0.26	+0.2
3,952,624	-		BT3107	0.28	-2.2
3,952,637	-		BT3107	0.28	+1.2
3,952,667	+		BT3107	0.30	-2.5
3,952,859	+		BT3107	0.42	+0.6
3,952,861	+		BT3107	0.42	-0.4
3,952,869	-		BT3107	0.43	+0.2
3,952,910	+		BT3107	0.45	-1.4
3,952,911	-		BT3107	0.45	-1.1
3,952,911	-		BT3107	0.45	-1.2
3,952,986	+		BT3107	0.50	+0.2
3,953,045	+		BT3107	0.54	-1.1
3,953,072	+		BT3107	0.55	-0.7
3,953,085	-		BT3107	0.56	-1.4
3,953,111	+		BT3107	0.58	-4.0
3,953,111	+		BT3107	0.58	-0.8
3,953,114	-		BT3107	0.58	-0.2
3,953,122	+		BT3107	0.58	-2.5
3,953,192	+		BT3107	0.63	-2.7
3,953,192	+		BT3107	0.63	-1.0
3,953,195	+		BT3107	0.63	+0.5
3,953,195	+		BT3107	0.63	-2.3
3,953,197	+		BT3107	0.63	+0.2
3,953,197	+		BT3107	0.63	-2.2
3,953,197	+		BT3107	0.63	-0.5
3,953,200	+		BT3107	0.63	-0.7
3,953,201	-		BT3107	0.63	-1.1
3,953,201	-		BT3107	0.63	-0.7
3,953,221	-		BT3107	0.65	-1.8
3,953,270	-		BT3107	0.68	-0.4
3,953,291	+		BT3107	0.69	-1.0
3,953,296	+		BT3107	0.69	-0.3
3,953,350	-		BT3107	0.72	-2.2
3,953,370	-		BT3107	0.74	-2.0
3,953,371	+		BT3107	0.74	-1.4
3,953,372	-		BT3107	0.74	+0.6
3,953,372	-		BT3107	0.74	-1.9
3,953,372	-		BT3107	0.74	+0.2
3,953,372	-		BT3107	0.74	-1.6
3,953,372	-		BT3107	0.74	-0.8
3,953,372	-		BT3107	0.74	+0.2
3,953,372	-		BT3107	0.74	-0.8
3,953,375	+		BT3107	0.74	-0.3
3,953,438	+		BT3107	0.78	+1.2
3,953,441	-		BT3107	0.78	-1.4
3,953,527	+		BT3107	0.83	-0.9
3,953,540	+		BT3107	0.84	+0.8
3,953,573	+		BT3107	0.86	-0.4
3,953,573	+		BT3107	0.86	-1.4
3,953,647	+				-1.4
3,953,648	-				-2.3
3,953,665	+				+1.0
3,953,690	+				-1.5
3,953,694	+				-0.9
3,953,761	-				-2.0
3,953,778	-				-2.6
3,953,783	+				-2.2
3,953,799	-				-1.5
3,953,803	-				-1.1
3,953,810	+				-3.4
3,953,814	+				-1.7
3,953,823	+				-1.6
3,953,823	+				-1.8
3,953,866	+				-0.1
3,953,867	-				+0.2
3,953,869	+				+1.9
3,953,870	-				-2.3
3,953,870	-				-2.2
3,953,871	+				-0.2
3,953,872	-				-0.8
3,953,874	-				-0.1
3,953,891	+				-1.0
3,953,957	+		BT3108	0.14	-1.8
3,953,957	+		BT3108	0.14	-0.4
3,953,958	-		BT3108	0.14	-0.4
3,953,958	-		BT3108	0.14	-2.0
3,953,961	+		BT3108	0.14	-0.7
3,953,961	+		BT3108	0.14	-3.0
3,953,962	-		BT3108	0.14	-1.8
3,953,964	+		BT3108	0.14	+0.7
3,953,967	+		BT3108	0.15	-1.6
3,953,967	+		BT3108	0.15	+0.5
3,954,037	+		BT3108	0.22	+0.4
3,954,037	+		BT3108	0.22	+1.8
3,954,083	-		BT3108	0.26	-0.8
3,954,089	-		BT3108	0.27	-0.5
3,954,113	-		BT3108	0.29	-1.4
3,954,145	-		BT3108	0.33	-1.4
3,954,149	+		BT3108	0.33	-0.5
3,954,173	-		BT3108	0.35	-1.4
3,954,201	+		BT3108	0.38	-2.6
3,954,201	+		BT3108	0.38	-1.0
3,954,202	-		BT3108	0.38	-0.3
3,954,229	+		BT3108	0.41	-2.1
3,954,229	+		BT3108	0.41	-1.1
3,954,266	-		BT3108	0.45	-6.6
3,954,323	+		BT3108	0.51	+0.2
3,954,330	+		BT3108	0.51	-1.3
3,954,330	+		BT3108	0.51	+0.6
3,954,330	+		BT3108	0.51	+0.7
3,954,331	-		BT3108	0.51	-2.1
3,954,336	+		BT3108	0.52	-0.8
3,954,337	-		BT3108	0.52	-0.4
3,954,340	-		BT3108	0.52	-0.4
3,954,404	+		BT3108	0.59	-0.4
3,954,405	-		BT3108	0.59	-1.5
3,954,429	+		BT3108	0.61	-1.4
3,954,431	+		BT3108	0.62	-1.7
3,954,431	+		BT3108	0.62	-0.2
3,954,431	+		BT3108	0.62	-1.6
3,954,432	-		BT3108	0.62	-1.6
3,954,457	+		BT3108	0.64	-0.7
3,954,458	-		BT3108	0.64	-1.6
3,954,472	+		BT3108	0.66	-0.4
3,954,473	-		BT3108	0.66	+0.6
3,954,473	-		BT3108	0.66	+0.0
3,954,474	+		BT3108	0.66	-1.3
3,954,475	-		BT3108	0.66	+0.8
3,954,475	-		BT3108	0.66	-0.7
3,954,484	-		BT3108	0.67	+0.2
3,954,486	+		BT3108	0.67	-1.0
3,954,490	+		BT3108	0.67	-0.9
3,954,561	-		BT3108	0.75	-2.2
3,954,575	-		BT3108	0.76	-0.1
3,954,575	-		BT3108	0.76	-0.1
3,954,575	-		BT3108	0.76	-1.6
3,954,622	+		BT3108	0.81	-0.4
3,954,643	+		BT3108	0.83	-0.7
3,954,653	-		BT3108	0.84	-1.8
3,954,653	-		BT3108	0.84	-0.4
3,954,666	+		BT3108	0.85	-1.5
3,954,687	-		BT3108	0.87	+0.2
3,954,721	+				-0.6
3,954,759	-				-1.2
3,954,768	-				-1.2