Experiment: Post-colonization (Day 8) - Cage1;Mouse4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0355 and BT0356 are separated by 25 nucleotides BT0356 and BT0357 are separated by 335 nucleotides BT0357 and BT0358 are separated by 20 nucleotides
BT0355: BT0355 - L-arabinose/L-arabinobiose symporter <small>(from data)</small>, at 427,031 to 428,725
BT0355
BT0356: BT0356 - aldose 1-epimerase precursor (NCBI ptt file), at 428,751 to 429,890
BT0356
BT0357: BT0357 - hypothetical protein (NCBI ptt file), at 430,226 to 430,474
BT0357
BT0358: BT0358 - transposase (NCBI ptt file), at 430,495 to 431,388
BT0358
Position (kb) 428
429
430 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 427.850 kb on + strand, within BT0355 at 427.869 kb on + strand, within BT0355 at 427.931 kb on + strand, within BT0355 at 427.948 kb on + strand, within BT0355 at 427.948 kb on + strand, within BT0355 at 428.176 kb on + strand, within BT0355 at 428.176 kb on + strand, within BT0355 at 428.301 kb on - strand, within BT0355 at 428.343 kb on - strand, within BT0355 at 428.347 kb on - strand, within BT0355 at 428.351 kb on + strand, within BT0355 at 428.352 kb on - strand, within BT0355 at 428.352 kb on - strand, within BT0355 at 428.451 kb on - strand, within BT0355 at 428.669 kb on - strand at 428.672 kb on - strand at 428.702 kb on + strand at 428.914 kb on - strand, within BT0356 at 428.941 kb on + strand, within BT0356 at 428.969 kb on - strand, within BT0356 at 428.970 kb on + strand, within BT0356 at 429.220 kb on + strand, within BT0356 at 429.220 kb on + strand, within BT0356 at 429.311 kb on + strand, within BT0356 at 429.457 kb on + strand, within BT0356 at 429.460 kb on - strand, within BT0356 at 429.584 kb on + strand, within BT0356 at 429.606 kb on + strand, within BT0356 at 429.612 kb on - strand, within BT0356 at 429.614 kb on + strand, within BT0356 at 429.645 kb on + strand, within BT0356
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 8) - Cage1;Mouse4 remove 427,850 + BT0355 0.48 -2.0 427,869 + BT0355 0.49 -0.3 427,931 + BT0355 0.53 -1.7 427,948 + BT0355 0.54 -0.3 427,948 + BT0355 0.54 -1.1 428,176 + BT0355 0.68 -1.3 428,176 + BT0355 0.68 -0.3 428,301 - BT0355 0.75 -0.7 428,343 - BT0355 0.77 -1.9 428,347 - BT0355 0.78 +1.3 428,351 + BT0355 0.78 -2.3 428,352 - BT0355 0.78 -2.1 428,352 - BT0355 0.78 -1.5 428,451 - BT0355 0.84 -1.1 428,669 - -0.9 428,672 - -2.4 428,702 + -2.1 428,914 - BT0356 0.14 +0.3 428,941 + BT0356 0.17 -0.7 428,969 - BT0356 0.19 +0.7 428,970 + BT0356 0.19 -1.9 429,220 + BT0356 0.41 -1.7 429,220 + BT0356 0.41 -1.7 429,311 + BT0356 0.49 -1.7 429,457 + BT0356 0.62 -1.3 429,460 - BT0356 0.62 -1.3 429,584 + BT0356 0.73 -3.3 429,606 + BT0356 0.75 -1.9 429,612 - BT0356 0.76 -0.3 429,614 + BT0356 0.76 +1.3 429,645 + BT0356 0.78 -1.7
Or see this region's nucleotide sequence