Experiment: Post-colonization (Day 6) - Cage4;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0409 and BT0410 are separated by 117 nucleotides BT0410 and BT0411 are separated by 211 nucleotides BT0411 and BT0412 are separated by 11 nucleotides
BT0409: BT0409 - putative short-chain dehydrogenase (NCBI ptt file), at 495,536 to 496,306
BT0409
BT0410: BT0410 - hypothetical protein (NCBI ptt file), at 496,424 to 496,918
BT0410
BT0411: BT0411 - CysQ, sulfite synthesis pathway protein (NCBI ptt file), at 497,130 to 497,936
BT0411
BT0412: BT0412 - putative Na+/sulfate symporter (NCBI ptt file), at 497,948 to 499,501
BT0412
Position (kb) 497
498 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 496.205 kb on + strand, within BT0409 at 496.286 kb on + strand at 496.288 kb on + strand at 496.305 kb on - strand at 496.606 kb on + strand, within BT0410 at 496.612 kb on + strand, within BT0410 at 496.686 kb on + strand, within BT0410 at 496.865 kb on + strand, within BT0410 at 496.909 kb on + strand at 496.913 kb on + strand at 496.991 kb on - strand at 497.128 kb on + strand at 497.178 kb on - strand at 497.307 kb on - strand, within BT0411 at 497.360 kb on - strand, within BT0411 at 497.360 kb on - strand, within BT0411 at 497.521 kb on - strand, within BT0411 at 497.522 kb on + strand, within BT0411 at 497.523 kb on - strand, within BT0411 at 497.566 kb on + strand, within BT0411 at 497.770 kb on - strand, within BT0411 at 497.877 kb on + strand at 497.880 kb on - strand at 497.945 kb on + strand at 497.946 kb on - strand at 497.947 kb on + strand at 497.948 kb on - strand at 497.971 kb on - strand at 497.976 kb on + strand at 498.013 kb on + strand at 498.122 kb on - strand, within BT0412 at 498.135 kb on + strand at 498.281 kb on - strand, within BT0412 at 498.281 kb on - strand, within BT0412 at 498.291 kb on + strand, within BT0412 at 498.456 kb on - strand, within BT0412 at 498.520 kb on - strand, within BT0412 at 498.520 kb on - strand, within BT0412 at 498.522 kb on - strand, within BT0412 at 498.722 kb on - strand, within BT0412 at 498.800 kb on - strand, within BT0412 at 498.845 kb on - strand, within BT0412 at 498.929 kb on - strand, within BT0412
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 6) - Cage4;Mouse1 remove 496,205 + BT0409 0.87 -1.0 496,286 + -0.0 496,288 + +1.0 496,305 - +0.6 496,606 + BT0410 0.37 -0.6 496,612 + BT0410 0.38 -1.3 496,686 + BT0410 0.53 -1.1 496,865 + BT0410 0.89 +1.7 496,909 + -2.5 496,913 + -0.6 496,991 - +1.0 497,128 + -1.7 497,178 - +1.0 497,307 - BT0411 0.22 -2.5 497,360 - BT0411 0.29 -2.5 497,360 - BT0411 0.29 -1.7 497,521 - BT0411 0.48 -0.7 497,522 + BT0411 0.49 +1.0 497,523 - BT0411 0.49 -1.0 497,566 + BT0411 0.54 -1.0 497,770 - BT0411 0.79 -1.1 497,877 + +0.4 497,880 - -0.9 497,945 + +0.1 497,946 - -0.0 497,947 + -1.2 497,948 - -1.8 497,971 - -1.8 497,976 + -0.1 498,013 + -0.7 498,122 - BT0412 0.11 -1.7 498,135 + -0.0 498,281 - BT0412 0.21 -0.7 498,281 - BT0412 0.21 -1.5 498,291 + BT0412 0.22 +0.4 498,456 - BT0412 0.33 -0.7 498,520 - BT0412 0.37 -0.2 498,520 - BT0412 0.37 -2.0 498,522 - BT0412 0.37 -1.9 498,722 - BT0412 0.50 +3.0 498,800 - BT0412 0.55 -0.6 498,845 - BT0412 0.58 -0.7 498,929 - BT0412 0.63 -0.0
Or see this region's nucleotide sequence