Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2757

Experiment: Post-colonization (Day 3) - Cage7;Mouse1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 3) - Cage7;Mouse1
3,417,300	+		BT2756	0.27	-1.2
3,417,301	-		BT2756	0.27	+0.4
3,417,368	-		BT2756	0.32	+0.9
3,417,370	+		BT2756	0.32	-0.9
3,417,433	+		BT2756	0.37	-1.3
3,417,434	-		BT2756	0.37	+0.1
3,417,438	+		BT2756	0.37	-1.7
3,417,498	+		BT2756	0.42	-0.7
3,417,528	+		BT2756	0.44	-0.1
3,417,587	+		BT2756	0.49	-0.4
3,417,640	+		BT2756	0.53	-0.3
3,417,640	+		BT2756	0.53	-1.8
3,417,641	-		BT2756	0.53	-0.1
3,417,658	+		BT2756	0.54	+0.9
3,417,685	+		BT2756	0.56	+0.2
3,417,686	-		BT2756	0.56	+0.1
3,417,686	-		BT2756	0.56	-1.4
3,417,731	-		BT2756	0.60	-0.4
3,417,754	-		BT2756	0.61	+0.2
3,417,781	+		BT2756	0.64	-0.4
3,417,782	-		BT2756	0.64	-2.2
3,417,783	+		BT2756	0.64	+1.3
3,417,883	+		BT2756	0.71	-1.6
3,417,901	+		BT2756	0.73	+0.5
3,417,992	+		BT2756	0.80	+0.1
3,417,992	+		BT2756	0.80	+0.4
3,417,993	-		BT2756	0.80	-1.7
3,417,993	-		BT2756	0.80	+0.1
3,417,994	+		BT2756	0.80	-1.1
3,418,045	+		BT2756	0.84	+0.1
3,418,045	+		BT2756	0.84	+0.7
3,418,056	-		BT2756	0.85	-1.0
3,418,109	+		BT2756	0.89	+1.0
3,418,169	+				+0.9
3,418,169	+				-0.2
3,418,170	-				-0.9
3,418,170	-				-0.1
3,418,190	-				-1.3
3,418,207	-				-1.8
3,418,211	-				+0.4
3,418,211	-				-1.2
3,418,211	-				-0.3
3,418,230	+				+2.7
3,418,251	+				-0.1
3,418,252	-				-0.6
3,418,256	+				+0.7
3,418,257	-				-1.1
3,418,260	-				-0.7
3,418,262	-				-1.4
3,418,262	-				-1.5
3,418,288	-				+0.4
3,418,316	+				-1.3
3,418,319	+				-0.3
3,418,319	+				-0.4
3,418,322	+				-1.8
3,418,328	+				-0.4
3,418,432	+		BT2757	0.14	+0.3
3,418,694	+		BT2757	0.38	-1.6
3,418,695	-		BT2757	0.38	-0.4
3,418,700	+		BT2757	0.39	+0.3
3,418,700	+		BT2757	0.39	-0.1
3,418,701	-		BT2757	0.39	-1.1
3,418,727	+		BT2757	0.41	-0.9
3,418,727	+		BT2757	0.41	+0.3
3,418,727	+		BT2757	0.41	-0.4
3,418,756	-		BT2757	0.44	-1.0
3,418,802	+		BT2757	0.49	+1.5
3,418,802	+		BT2757	0.49	+0.1
3,418,803	-		BT2757	0.49	-2.4
3,418,829	+		BT2757	0.51	+0.3
3,418,830	-		BT2757	0.51	-1.7
3,418,868	+		BT2757	0.55	-1.1
3,418,868	+		BT2757	0.55	+0.9
3,418,869	-		BT2757	0.55	-1.0
3,418,869	-		BT2757	0.55	-0.7
3,418,869	-		BT2757	0.55	-3.7
3,418,869	-		BT2757	0.55	+0.9
3,418,906	+		BT2757	0.58	+0.3
3,418,907	-		BT2757	0.58	-1.2
3,418,925	+		BT2757	0.60	-0.1
3,418,926	-		BT2757	0.60	+0.8
3,418,930	+		BT2757	0.61	-2.7
3,418,930	+		BT2757	0.61	+0.9
3,418,930	+		BT2757	0.61	-1.0
3,418,930	+		BT2757	0.61	-3.2
3,418,930	+		BT2757	0.61	-0.9
3,418,931	-		BT2757	0.61	-1.1
3,418,931	-				-0.7
3,418,932	+		BT2757	0.61	+0.9
3,418,932	+		BT2757	0.61	-0.1
3,418,956	+		BT2757	0.63	-1.4
3,418,956	+		BT2757	0.63	-1.0
3,419,016	-		BT2757	0.69	+0.6
3,419,018	-		BT2757	0.69	-1.2
3,419,018	-		BT2757	0.69	+0.5
3,419,018	-		BT2757	0.69	-1.1
3,419,018	-		BT2757	0.69	+0.6
3,419,023	+		BT2757	0.69	+2.2
3,419,024	-		BT2757	0.69	-0.8
3,419,044	-		BT2757	0.71	-0.7
3,419,073	+		BT2757	0.74	-1.4
3,419,074	-		BT2757	0.74	-1.3
3,419,163	-		BT2757	0.83	+0.3
3,419,163	-		BT2757	0.83	-1.4
3,419,196	+		BT2757	0.86	-1.0
3,419,240	+		BT2757	0.90	-0.6
3,419,240	+		BT2757	0.90	-2.3
3,419,241	-				-0.1
3,419,276	+				-0.1
3,419,279	+				+0.7
3,419,279	+				-0.4
3,419,279	+				+0.4
3,419,280	-				-1.5
3,419,344	+				-0.0
3,419,357	+				-2.3
3,419,357	+				-1.1
3,419,379	+				-0.8
3,419,379	+				-1.1
3,419,384	+				-1.2
3,419,402	+				-0.8
3,419,403	-				+1.2
3,419,403	-				-0.3
3,419,403	-				+1.9
3,419,403	-				-0.8
3,419,413	+				-1.3
3,419,413	+				-2.9
3,419,492	+		BT2758	0.11	-2.1
3,419,492	+		BT2758	0.11	+0.9
3,419,493	-		BT2758	0.11	-2.0
3,419,493	-		BT2758	0.11	-0.8
3,419,502	+		BT2758	0.12	-0.2
3,419,502	+		BT2758	0.12	-1.1
3,419,502	+		BT2758	0.12	+0.9
3,419,503	-		BT2758	0.12	-0.4
3,419,559	+		BT2758	0.17	-0.1
3,419,559	+		BT2758	0.17	-1.1
3,419,559	+		BT2758	0.17	-1.6
3,419,560	-		BT2758	0.17	-0.9
3,419,560	-		BT2758	0.17	-1.2
3,419,715	+		BT2758	0.30	-0.8
3,419,752	+		BT2758	0.33	+0.1
3,419,752	+		BT2758	0.33	-2.1
3,419,792	-		BT2758	0.37	-0.7
3,419,792	-		BT2758	0.37	+0.2
3,419,797	+		BT2758	0.37	-1.2
3,419,816	-		BT2758	0.39	-1.3
3,419,824	-		BT2758	0.39	+0.3
3,419,824	-		BT2758	0.39	-0.9
3,419,851	+		BT2758	0.42	-0.3
3,419,851	+		BT2758	0.42	-2.6
3,419,854	-		BT2758	0.42	-0.9
3,419,877	+		BT2758	0.44	-1.2
3,419,878	-		BT2758	0.44	-1.9
3,419,888	+		BT2758	0.45	+0.3
3,419,989	+		BT2758	0.54	-0.9
3,419,991	+		BT2758	0.54	-1.4
3,419,991	+		BT2758	0.54	-0.5
3,419,992	-		BT2758	0.54	-1.5
3,419,997	-		BT2758	0.54	-1.6
3,420,016	-		BT2758	0.56	-2.8
3,420,072	+		BT2758	0.61	-0.4
3,420,072	+		BT2758	0.61	-0.7
3,420,073	-		BT2758	0.61	-0.4
3,420,075	+		BT2758	0.61	-0.2
3,420,075	+		BT2758	0.61	-1.8
3,420,075	+		BT2758	0.61	+1.9
3,420,075	+		BT2758	0.61	-2.1
3,420,079	+		BT2758	0.61	-1.1
3,420,079	+		BT2758	0.61	-0.8
3,420,079	+		BT2758	0.61	-0.1
3,420,080	-		BT2758	0.61	-0.7
3,420,083	-		BT2758	0.62	-1.4
3,420,083	-		BT2758	0.62	-1.5
3,420,085	+		BT2758	0.62	+0.2
3,420,085	+		BT2758	0.62	-0.3
3,420,085	+		BT2758	0.62	-2.1
3,420,142	+		BT2758	0.67	-0.7
3,420,174	+		BT2758	0.69	+0.0
3,420,175	-		BT2758	0.69	+0.3
3,420,219	+		BT2758	0.73	-1.5
3,420,227	-		BT2758	0.74	-1.1
3,420,249	+		BT2758	0.76	-1.2
3,420,249	+		BT2758	0.76	-1.5
3,420,250	-		BT2758	0.76	-0.4
3,420,250	-		BT2758	0.76	-0.1
3,420,332	+		BT2758	0.83	-3.0
3,420,332	+		BT2758	0.83	-1.1
3,420,346	+		BT2758	0.84	-0.1