Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3738

Experiment: Post-colonization (Day 3) - Cage2;Mouse4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 3) - Cage2;Mouse4
4,847,085	+		BT3737	0.56	-0.4
4,847,173	+		BT3737	0.86	-1.1
4,847,173	+		BT3737	0.86	-1.3
4,847,174	-		BT3737	0.86	-0.1
4,847,191	+				-1.6
4,847,218	+				-0.1
4,847,260	+				+0.1
4,847,298	-				+0.4
4,847,328	-				-1.4
4,847,333	+				-2.0
4,847,441	-				+0.5
4,847,459	+				-1.4
4,847,460	-				-0.2
4,847,474	-				-0.4
4,847,474	-				-1.0
4,847,484	-				+0.6
4,847,486	+				+0.8
4,847,510	+				-0.6
4,847,553	-				+0.8
4,847,576	+				-1.2
4,847,610	-				-0.0
4,847,680	-				-0.3
4,847,689	-				+0.3
4,847,787	-				-2.2
4,847,789	-				-0.4
4,847,811	+				-1.2
4,847,834	-				-1.4
4,847,838	-				+0.2
4,847,877	-				-2.4
4,847,884	-				+0.2
4,847,896	+				+2.5
4,848,117	+				+1.3
4,848,130	+				+0.4
4,848,130	+				-1.0
4,848,134	-				-0.1
4,848,158	+				-0.1
4,848,231	-				+0.4
4,848,232	+				-0.1
4,848,232	+				+0.2
4,848,233	-				+0.9
4,848,233	-				+1.3
4,848,259	-				+0.4
4,848,266	+				+0.4
4,848,290	+				+0.9
4,848,292	+				+0.0
4,848,311	-				+0.9
4,848,366	+				-0.1
4,848,367	-				+0.7
4,848,367	-				+1.9
4,848,367	-				+1.5
4,848,367	-				+0.6
4,848,369	+				+1.1
4,848,370	-				-0.4
4,848,438	-				+0.5
4,848,441	+				+1.1
4,848,492	-		BT3738	0.10	-0.1
4,848,511	+		BT3738	0.11	+0.9
4,848,519	+		BT3738	0.11	+0.0
4,848,524	+		BT3738	0.11	+0.3
4,848,533	-		BT3738	0.11	+0.4
4,848,533	-		BT3738	0.11	-0.5
4,848,545	+		BT3738	0.12	+0.6
4,848,547	+		BT3738	0.12	+0.9
4,848,548	-		BT3738	0.12	+1.3
4,848,601	-		BT3738	0.13	+0.9
4,848,608	-		BT3738	0.13	+0.7
4,848,708	+		BT3738	0.16	+1.4
4,848,724	+		BT3738	0.16	+2.2
4,848,744	-		BT3738	0.17	+1.1
4,848,746	+		BT3738	0.17	-0.6
4,848,747	-		BT3738	0.17	+1.4
4,848,747	-		BT3738	0.17	-0.1
4,848,752	-		BT3738	0.17	+0.7
4,848,769	-		BT3738	0.17	-0.5
4,848,778	+		BT3738	0.18	+0.9
4,848,782	+		BT3738	0.18	-0.3
4,848,800	-		BT3738	0.18	-0.5
4,848,800	-		BT3738	0.18	+0.2
4,848,801	+		BT3738	0.18	+0.4
4,848,802	-		BT3738	0.18	-0.1
4,848,803	+		BT3738	0.18	-0.4
4,848,804	-		BT3738	0.18	+0.0
4,848,839	+		BT3738	0.19	+1.7
4,848,901	-		BT3738	0.21	-0.1
4,848,924	-		BT3738	0.21	+0.2
4,848,925	+		BT3738	0.21	-0.6
4,848,926	-		BT3738	0.21	-0.7
4,848,926	-		BT3738	0.21	-1.1
4,848,962	-		BT3738	0.22	-0.6
4,848,963	+		BT3738	0.22	+0.7
4,848,976	+		BT3738	0.23	+0.9
4,848,983	+		BT3738	0.23	+0.7
4,849,007	-		BT3738	0.23	+3.1
4,849,020	-		BT3738	0.24	+0.5
4,849,108	-		BT3738	0.26	+0.2
4,849,289	-		BT3738	0.30	+0.8
4,849,327	-		BT3738	0.31	+0.7
4,849,362	+		BT3738	0.32	-0.2
4,849,363	-		BT3738	0.32	+1.7
4,849,419	+		BT3738	0.34	-0.2
4,849,420	-		BT3738	0.34	+2.2
4,849,433	+		BT3738	0.34	-0.1
4,849,436	-		BT3738	0.34	-0.1
4,849,439	+		BT3738	0.34	+1.6
4,849,470	+		BT3738	0.35	+0.9
4,849,470	+		BT3738	0.35	+1.4
4,849,471	-		BT3738	0.35	+1.4
4,849,471	-		BT3738	0.35	+1.5
4,849,485	-		BT3738	0.35	-0.1
4,849,542	+		BT3738	0.37	+1.3
4,849,611	-		BT3738	0.38	+1.4
4,849,670	+		BT3738	0.40	+0.3
4,849,673	-		BT3738	0.40	+1.2
4,849,674	+		BT3738	0.40	+0.1
4,849,684	-		BT3738	0.40	+0.2
4,849,710	-		BT3738	0.41	+0.5
4,849,710	-		BT3738	0.41	+1.1
4,849,710	-		BT3738	0.41	+0.2
4,849,711	+		BT3738	0.41	+1.5
4,849,711	+		BT3738	0.41	+0.4
4,849,712	-		BT3738	0.41	+0.9
4,849,742	+		BT3738	0.42	-0.1
4,849,753	+		BT3738	0.42	+0.1
4,849,765	+		BT3738	0.42	+1.0
4,849,765	+		BT3738	0.42	-0.1
4,849,816	+		BT3738	0.44	+0.7
4,849,817	-		BT3738	0.44	-0.8
4,849,886	-		BT3738	0.45	+0.5
4,849,964	+		BT3738	0.47	+0.2
4,850,058	+		BT3738	0.50	-1.6
4,850,059	-		BT3738	0.50	-0.1
4,850,077	-		BT3738	0.50	+1.6
4,850,081	+		BT3738	0.50	-1.1
4,850,082	-		BT3738	0.50	+2.9
4,850,093	+		BT3738	0.50	-0.4
4,850,132	-		BT3738	0.51	-0.2
4,850,132	-		BT3738	0.51	+0.9
4,850,202	-		BT3738	0.53	+1.5
4,850,216	-		BT3738	0.54	+3.0
4,850,252	-		BT3738	0.54	+0.9
4,850,317	+		BT3738	0.56	+0.5
4,850,318	-		BT3738	0.56	-0.1
4,850,318	-		BT3738	0.56	+1.4
4,850,337	+		BT3738	0.57	+0.5
4,850,337	+		BT3738	0.57	+1.4
4,850,338	-		BT3738	0.57	+0.9
4,850,364	-		BT3738	0.57	+2.7
4,850,378	-		BT3738	0.58	+0.9
4,850,390	-		BT3738	0.58	+1.3
4,850,456	-		BT3738	0.60	+1.5
4,850,462	-		BT3738	0.60	+1.3
4,850,467	-		BT3738	0.60	-0.5
4,850,546	-		BT3738	0.62	+0.8
4,850,552	-		BT3738	0.62	+1.1
4,850,602	+		BT3738	0.63	+1.4
4,850,603	-		BT3738	0.63	+0.1
4,850,630	-		BT3738	0.64	+1.2
4,850,635	+		BT3738	0.64	+0.7
4,850,644	-		BT3738	0.64	+0.2
4,850,656	+		BT3738	0.65	-0.8
4,850,656	+		BT3738	0.65	+0.6
4,850,707	-		BT3738	0.66	+0.9
4,850,707	-		BT3738	0.66	+0.6
4,850,752	+		BT3738	0.67	+0.7
4,850,752	+		BT3738	0.67	+0.9
4,850,752	+		BT3738	0.67	-1.7
4,850,813	+		BT3738	0.69	-0.1
4,850,831	+		BT3738	0.69	+0.1
4,850,929	+		BT3738	0.71	-0.6
4,850,962	+		BT3738	0.72	-1.4
4,850,990	-		BT3738	0.73	+0.4
4,851,040	+		BT3738	0.74	+0.4
4,851,041	-		BT3738	0.74	-0.1
4,851,041	-		BT3738	0.74	+0.3
4,851,041	-		BT3738	0.74	-0.6
4,851,045	+		BT3738	0.74	+0.6
4,851,093	-		BT3738	0.76	-0.3
4,851,112	+		BT3738	0.76	+0.7
4,851,112	+		BT3738	0.76	+0.9
4,851,113	-		BT3738	0.76	+0.9
4,851,196	+		BT3738	0.78	+2.3
4,851,197	-		BT3738	0.78	+1.7
4,851,295	-		BT3738	0.81	-0.5
4,851,313	+		BT3738	0.81	+1.2
4,851,331	+		BT3738	0.81	-1.5
4,851,361	+		BT3738	0.82	+0.7
4,851,362	-		BT3738	0.82	-0.2
4,851,379	+		BT3738	0.83	-0.4
4,851,422	-		BT3738	0.84	+1.0
4,851,422	-		BT3738	0.84	+0.3
4,851,434	-		BT3738	0.84	-1.7
4,851,448	+		BT3738	0.84	+1.4
4,851,449	-		BT3738	0.84	+0.9
4,851,459	+		BT3738	0.85	+1.6
4,851,460	-		BT3738	0.85	+0.9
4,851,602	+		BT3738	0.88	-0.6
4,851,604	+		BT3738	0.88	-0.9
4,851,606	+		BT3738	0.88	+0.2
4,851,607	-		BT3738	0.88	+0.6
4,851,607	-		BT3738	0.88	-1.5
4,851,630	+		BT3738	0.89	-0.5
4,851,655	-		BT3738	0.90	+0.2
4,851,717	+				+1.2
4,851,730	+				-0.2
4,851,730	+				+1.2
4,851,731	-				+0.1
4,851,731	-				+1.9
4,851,737	-				+1.6
4,851,757	-				+1.0
4,851,775	+				+0.9
4,851,788	-				+0.4
4,851,811	-				+1.0
4,851,816	+				+0.6
4,851,817	-				+0.4
4,851,817	-				+1.3
4,851,835	+				-0.1
4,851,836	-				+1.1
4,851,854	+				+1.5
4,851,854	+				+0.4
4,851,855	-				+2.3
4,851,896	+				+0.9
4,851,896	+				+2.2
4,851,897	-				-0.1
4,851,952	+				+0.4
4,851,952	+				-0.1
4,851,952	+				+2.5
4,851,952	+				-1.1
4,851,953	-				+0.9
4,852,011	+				+0.7
4,852,023	-				+0.6
4,852,026	-				+0.8
4,852,026	-				+1.0
4,852,027	+				-2.1
4,852,028	-				+0.1
4,852,067	+				+0.9
4,852,067	+				-1.2
4,852,068	-				-0.9
4,852,072	+				-0.7
4,852,089	+				-0.3
4,852,216	+				-1.1
4,852,223	-				-0.6
4,852,257	+				-0.0
4,852,259	+				-0.9
4,852,269	+				-0.8
4,852,278	+				-0.6
4,852,279	-				-0.6
4,852,293	+				-0.1
4,852,294	-				+0.4
4,852,294	-				-1.1
4,852,294	-				+0.9
4,852,363	-				-0.3
4,852,372	+		BT3739	0.10	-1.1
4,852,372	+		BT3739	0.10	-1.8
4,852,373	-		BT3739	0.10	+0.7
4,852,408	+		BT3739	0.12	-1.6
4,852,420	+		BT3739	0.13	-0.6
4,852,486	+		BT3739	0.18	-0.9
4,852,512	+		BT3739	0.19	+0.9
4,852,524	+		BT3739	0.20	+0.1
4,852,525	-		BT3739	0.20	-0.6
4,852,530	-		BT3739	0.21	-0.3
4,852,530	-		BT3739	0.21	-1.0
4,852,631	-		BT3739	0.27	-1.9
4,852,667	-		BT3739	0.30	-0.5
4,852,702	-		BT3739	0.32	+0.2
4,852,714	+		BT3739	0.33	-0.8
4,852,747	+		BT3739	0.35	-0.6
4,852,789	+		BT3739	0.38	-0.1
4,852,790	-		BT3739	0.38	+0.6
4,852,815	-		BT3739	0.39	-1.2
4,852,929	+		BT3739	0.47	-0.4
4,852,930	-		BT3739	0.47	-1.4
4,852,930	-		BT3739	0.47	+1.4
4,852,930	-		BT3739	0.47	+0.4
4,852,933	-		BT3739	0.47	-0.2
4,852,933	-		BT3739	0.47	+0.6
4,852,985	-		BT3739	0.51	-0.6
4,853,007	-		BT3739	0.52	-0.9
4,853,012	-		BT3739	0.52	-1.2
4,853,035	-		BT3739	0.54	-2.1
4,853,059	+		BT3739	0.55	-0.1
4,853,060	-		BT3739	0.56	+0.8
4,853,060	-		BT3739	0.56	+0.3