Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT2461

Experiment: Post-colonization (Day 3) - Cage1;Mouse2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 3) - Cage1;Mouse2
3,079,418	+		BT2460	0.47	+2.6
3,079,450	-		BT2460	0.48	-1.2
3,079,450	-		BT2460	0.48	-1.0
3,079,453	-		BT2460	0.49	-1.2
3,079,488	+		BT2460	0.51	-2.2
3,079,489	-		BT2460	0.51	-0.3
3,079,501	-		BT2460	0.51	-1.3
3,079,511	-		BT2460	0.52	-0.0
3,079,513	-		BT2460	0.52	-1.2
3,079,546	+		BT2460	0.54	-0.0
3,079,547	-		BT2460	0.54	+0.6
3,079,556	-		BT2460	0.55	+1.6
3,079,556	-		BT2460	0.55	-1.0
3,079,559	+		BT2460	0.55	-0.5
3,079,649	+		BT2460	0.60	-0.2
3,079,810	+		BT2460	0.69	+1.0
3,079,810	+		BT2460	0.69	-0.3
3,079,825	-		BT2460	0.70	-1.3
3,079,869	-		BT2460	0.73	-0.8
3,079,869	-		BT2460	0.73	-1.1
3,079,884	+		BT2460	0.74	-1.1
3,079,894	-		BT2460	0.74	-1.4
3,079,971	-		BT2460	0.79	-1.2
3,080,019	-		BT2460	0.82	-2.3
3,080,039	+		BT2460	0.83	-0.1
3,080,091	+		BT2460	0.86	-0.4
3,080,132	+		BT2460	0.88	-0.8
3,080,133	-		BT2460	0.88	-1.5
3,080,135	-		BT2460	0.88	-1.3
3,080,185	+				-0.4
3,080,191	+				-1.3
3,080,192	-				-0.2
3,080,193	+				-1.6
3,080,295	+				-1.3
3,080,296	-				-0.1
3,080,317	+				+2.2
3,080,318	-				+2.0
3,080,320	-				+1.0
3,080,320	-				-0.5
3,080,325	+				+1.6
3,080,325	+				-0.1
3,080,390	-				+0.4
3,080,394	+				-1.1
3,080,465	+				+1.0
3,080,501	-				-1.6
3,080,501	-				-0.0
3,080,522	-				+1.0
3,080,584	+				-0.7
3,080,584	+				-0.4
3,080,585	-				-0.0
3,080,593	+				-2.8
3,080,593	+				-0.3
3,080,593	+				-0.3
3,080,824	+		BT2461	0.14	-0.5
3,080,824	+		BT2461	0.14	+1.0
3,080,824	+		BT2461	0.14	-2.2
3,080,826	+		BT2461	0.14	+0.3
3,080,853	-		BT2461	0.15	-1.0
3,080,917	-		BT2461	0.17	+1.5
3,080,921	-		BT2461	0.17	-0.0
3,081,003	+		BT2461	0.19	-0.3
3,081,010	-		BT2461	0.19	+0.7
3,081,020	-		BT2461	0.20	-0.4
3,081,021	+		BT2461	0.20	+1.0
3,081,053	+		BT2461	0.21	-1.8
3,081,268	-		BT2461	0.27	-0.3
3,081,271	-		BT2461	0.27	-0.4
3,081,271	-		BT2461	0.27	+0.4
3,081,307	+		BT2461	0.28	+0.6
3,081,400	+		BT2461	0.31	-2.5
3,081,462	+		BT2461	0.33	+2.6
3,081,466	+		BT2461	0.33	+2.0
3,081,468	+		BT2461	0.33	+0.8
3,081,478	+		BT2461	0.33	-1.6
3,081,492	+		BT2461	0.34	-0.3
3,081,562	+		BT2461	0.36	-1.0
3,081,566	+		BT2461	0.36	-1.0
3,081,569	-				-0.0
3,081,685	+		BT2461	0.39	-0.0
3,081,690	+		BT2461	0.39	-0.7
3,081,691	-		BT2461	0.39	-0.7
3,081,707	-		BT2461	0.40	+0.4
3,081,707	-		BT2461	0.40	-1.7
3,081,707	-		BT2461	0.40	-0.0
3,081,707	-		BT2461	0.40	-1.7
3,081,708	+		BT2461	0.40	+0.6
3,081,709	-		BT2461	0.40	+2.0
3,081,742	-		BT2461	0.41	+1.0
3,081,742	-		BT2461	0.41	+0.6
3,081,795	+		BT2461	0.42	-2.5
3,081,801	+		BT2461	0.43	+1.3
3,081,855	+		BT2461	0.44	-1.2
3,081,858	+		BT2461	0.44	-0.7
3,081,859	-		BT2461	0.44	-0.0
3,081,936	-		BT2461	0.47	+1.2
3,081,937	+		BT2461	0.47	-0.0
3,081,937	+		BT2461	0.47	+0.4
3,081,973	+		BT2461	0.48	+3.3
3,081,993	+		BT2461	0.48	-0.0
3,082,030	-		BT2461	0.49	+0.7
3,082,196	-				+2.0
3,082,248	+		BT2461	0.56	-2.2
3,082,248	+		BT2461	0.56	+0.6
3,082,348	-		BT2461	0.59	+1.2
3,082,352	-		BT2461	0.59	+0.1
3,082,352	-		BT2461	0.59	+1.0
3,082,379	+		BT2461	0.60	-0.0
3,082,406	+		BT2461	0.60	-2.2
3,082,410	+		BT2461	0.61	-0.3
3,082,482	-		BT2461	0.63	-0.0
3,082,486	+		BT2461	0.63	+0.1
3,082,487	-		BT2461	0.63	+0.6
3,082,545	+		BT2461	0.65	-0.6
3,082,545	+		BT2461	0.65	-0.6
3,082,546	-		BT2461	0.65	+0.6
3,082,602	+		BT2461	0.66	-1.8
3,082,602	+		BT2461	0.66	-0.9
3,082,639	-		BT2461	0.67	-1.5
3,082,639	-		BT2461	0.67	-1.6
3,082,680	-		BT2461	0.68	+0.1
3,082,683	+		BT2461	0.69	-1.7
3,082,683	+		BT2461	0.69	-1.0
3,082,684	-		BT2461	0.69	+0.1
3,082,778	+		BT2461	0.71	-2.1
3,082,894	+		BT2461	0.75	-0.6
3,082,895	-		BT2461	0.75	+0.1
3,082,922	-		BT2461	0.76	-0.6
3,082,922	-		BT2461	0.76	+1.4
3,082,937	+		BT2461	0.76	-1.3
3,082,937	+		BT2461	0.76	+0.5
3,082,937	+		BT2461	0.76	-2.0
3,082,937	+		BT2461	0.76	+1.0
3,082,955	-		BT2461	0.77	-0.2
3,082,955	-		BT2461	0.77	-0.4
3,083,032	+		BT2461	0.79	-0.0
3,083,101	+		BT2461	0.81	-0.0
3,083,210	-		BT2461	0.84	+0.1
3,083,210	-		BT2461	0.84	-0.5
3,083,212	-		BT2461	0.84	-0.2
3,083,212	-		BT2461	0.84	-0.6
3,083,212	-		BT2461	0.84	-0.7
3,083,212	-		BT2461	0.84	-2.3
3,083,227	+		BT2461	0.85	+0.0
3,083,272	+		BT2461	0.86	-0.5
3,083,305	+		BT2461	0.87	+0.7
3,083,321	-		BT2461	0.87	+0.5
3,083,342	+		BT2461	0.88	-0.0
3,083,396	-		BT2461	0.90	-1.5
3,083,426	+				+0.4
3,083,426	+				-0.4
3,083,427	-				+2.8
3,083,427	-				-0.3
3,083,427	-				-0.7
3,083,429	-				-1.0
3,083,429	-				-0.2
3,083,456	+				-0.0
3,083,458	+				-0.7
3,083,485	+				-0.6
3,083,485	+				-0.8
3,083,509	+				-1.5
3,083,519	-				-1.0
3,083,524	+				-0.0
3,083,525	-				+1.6
3,083,551	-				-0.5
3,083,594	+				+0.2
3,083,594	+				-0.1
3,083,595	-				-1.9
3,083,643	-				+0.3
3,083,645	-				+0.1
3,083,680	-				+0.2
3,083,699	-				+0.7
3,083,736	+				-1.0
3,083,768	+				-0.9
3,083,768	+				-1.2
3,083,782	+				-0.8
3,083,792	+				-2.1
3,083,793	-				-0.5
3,083,798	+				+0.6
3,083,813	+				-1.9
3,083,897	+				-1.3
3,083,930	+				-1.7
3,083,985	+				-2.0
3,083,988	+				-2.3
3,084,057	-		BT2462	0.15	-0.0
3,084,076	+		BT2462	0.17	-0.7
3,084,077	-		BT2462	0.18	-1.0
3,084,077	-		BT2462	0.18	-0.2
3,084,077	-		BT2462	0.18	-1.1
3,084,087	+		BT2462	0.19	-2.0
3,084,131	+		BT2462	0.23	-2.1
3,084,132	-		BT2462	0.23	-1.3
3,084,155	-		BT2462	0.26	-1.0
3,084,164	+		BT2462	0.27	-2.9
3,084,164	+		BT2462	0.27	-0.2
3,084,199	-		BT2462	0.31	-0.6
3,084,237	+		BT2462	0.35	-1.0
3,084,294	+		BT2462	0.41	-0.3
3,084,294	+		BT2462	0.41	+1.0
3,084,296	+		BT2462	0.41	+1.0
3,084,296	+		BT2462	0.41	-1.2
3,084,297	-		BT2462	0.41	-0.6
3,084,297	-		BT2462	0.41	-0.0
3,084,300	-		BT2462	0.41	-0.0
3,084,300	-		BT2462	0.41	-0.6
3,084,389	+		BT2462	0.51	-0.6
3,084,426	+		BT2462	0.55	+0.3
3,084,489	+		BT2462	0.62	+0.6
3,084,489	+		BT2462	0.62	-0.4
3,084,513	+		BT2462	0.64	-1.1
3,084,513	+		BT2462	0.64	-0.9
3,084,513	+		BT2462	0.64	-0.2
3,084,514	-		BT2462	0.64	+0.5
3,084,612	-		BT2462	0.75	-1.3
3,084,637	-		BT2462	0.77	-1.6
3,084,637	-		BT2462	0.77	+0.6
3,084,642	-		BT2462	0.78	-0.0
3,084,684	+		BT2462	0.82	-1.5
3,084,702	-		BT2462	0.84	+0.6
3,084,724	+		BT2462	0.87	-0.1
3,084,731	+		BT2462	0.87	-2.5
3,084,745	+		BT2462	0.89	-1.2