Experiment: Post-colonization (Day 3) - Cage1;Mouse2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0618 and BT0619 are separated by 6 nucleotides BT0619 and BT0620 are separated by 26 nucleotides BT0620 and BT0621 are separated by 17 nucleotides
BT0618: BT0618 - Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfC (NCBI ptt file), at 763,095 to 764,432
BT0618
BT0619: BT0619 - Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfD (NCBI ptt file), at 764,439 to 765,431
BT0619
BT0620: BT0620 - Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfG (NCBI ptt file), at 765,458 to 766,141
BT0620
BT0621: BT0621 - Na+-transporting NADH:ubiquinone oxidoreductase, Electron transport complex protein rnfE (NCBI ptt file), at 766,159 to 766,743
BT0621
Position (kb) 764
765
766 Strain fitness (log2 ratio) -2
-1
0
1 at 763.603 kb on - strand, within BT0618 at 763.654 kb on + strand, within BT0618 at 763.688 kb on - strand, within BT0618 at 764.248 kb on - strand, within BT0618 at 764.396 kb on - strand at 764.459 kb on - strand at 764.465 kb on - strand at 764.509 kb on - strand at 764.831 kb on - strand, within BT0619 at 764.896 kb on - strand, within BT0619 at 765.451 kb on - strand at 765.457 kb on + strand at 766.042 kb on + strand, within BT0620 at 766.124 kb on - strand at 766.136 kb on - strand at 766.164 kb on + strand at 766.291 kb on - strand, within BT0621 at 766.291 kb on - strand, within BT0621 at 766.423 kb on + strand, within BT0621 at 766.424 kb on - strand, within BT0621
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 3) - Cage1;Mouse2 remove 763,603 - BT0618 0.38 -0.5 763,654 + BT0618 0.42 -1.5 763,688 - BT0618 0.44 +0.1 764,248 - BT0618 0.86 -1.2 764,396 - -0.5 764,459 - -2.5 764,465 - -1.5 764,509 - -0.5 764,831 - BT0619 0.39 -1.9 764,896 - BT0619 0.46 +0.1 765,451 - +0.8 765,457 + -0.5 766,042 + BT0620 0.85 +0.8 766,124 - -2.1 766,136 - +0.1 766,164 + +1.5 766,291 - BT0621 0.23 -1.9 766,291 - BT0621 0.23 -2.3 766,423 + BT0621 0.45 -2.2 766,424 - BT0621 0.45 -0.5
Or see this region's nucleotide sequence