Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4172

Experiment: Post-colonization (Day 2) - Cage5;Mouse1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 2) - Cage5;Mouse1
5,489,600	+		BT4171	0.13	-0.7
5,489,627	+		BT4171	0.17	-1.3
5,489,628	-		BT4171	0.17	-0.4
5,489,634	-		BT4171	0.18	-0.9
5,489,661	-		BT4171	0.22	-1.2
5,489,665	+		BT4171	0.23	+1.3
5,489,719	-		BT4171	0.31	-1.4
5,489,750	-		BT4171	0.36	-0.7
5,489,751	+		BT4171	0.36	+0.5
5,489,751	+		BT4171	0.36	-1.2
5,489,751	+		BT4171	0.36	-1.0
5,489,752	-		BT4171	0.36	-0.8
5,489,752	-		BT4171	0.36	+1.2
5,489,815	+		BT4171	0.46	+1.0
5,489,837	-		BT4171	0.49	-0.8
5,489,891	-		BT4171	0.58	+0.7
5,489,893	+		BT4171	0.58	+0.6
5,489,906	+		BT4171	0.60	-1.7
5,489,954	-		BT4171	0.67	-0.6
5,489,970	+		BT4171	0.70	-1.2
5,489,970	+		BT4171	0.70	-0.8
5,489,970	+		BT4171	0.70	-0.3
5,489,970	+		BT4171	0.70	+1.2
5,489,971	-		BT4171	0.70	-0.5
5,489,971	-		BT4171	0.70	+0.5
5,490,039	-		BT4171	0.80	-0.6
5,490,097	+		BT4171	0.89	-1.1
5,490,098	-		BT4171	0.89	+0.1
5,490,098	-		BT4171	0.89	+1.0
5,490,118	+				-0.4
5,490,119	-				-1.0
5,490,125	+				-0.0
5,490,165	+				+1.0
5,490,169	+				-0.4
5,490,169	+				-0.7
5,490,170	-				-0.6
5,490,170	-				+0.0
5,490,171	+				+1.0
5,490,172	-				+0.4
5,490,210	-				+0.7
5,490,238	+				-0.0
5,490,314	-				-1.3
5,490,334	-				-1.4
5,490,390	-				+0.3
5,490,414	+				+0.2
5,490,430	+				-1.1
5,490,479	+				+0.3
5,490,480	-				-1.1
5,490,482	+				-1.6
5,490,515	+				-1.8
5,490,530	-				-1.2
5,490,552	-				+0.2
5,490,806	+		BT4172	0.12	-2.2
5,490,836	+		BT4172	0.13	-1.0
5,490,853	-		BT4172	0.13	+2.0
5,490,875	+		BT4172	0.14	-0.7
5,490,913	-		BT4172	0.15	-1.5
5,490,915	-		BT4172	0.15	+0.4
5,490,915	-		BT4172	0.15	+0.4
5,490,952	-		BT4172	0.16	-1.8
5,490,957	-		BT4172	0.16	-2.1
5,490,980	+		BT4172	0.17	-0.1
5,490,986	+		BT4172	0.17	-2.2
5,490,986	+		BT4172	0.17	-0.3
5,490,986	+		BT4172	0.17	-1.2
5,490,995	+		BT4172	0.17	-0.9
5,491,041	-		BT4172	0.19	+0.7
5,491,064	+		BT4172	0.20	-0.0
5,491,064	+		BT4172	0.20	+0.1
5,491,102	-		BT4172	0.21	+1.4
5,491,269	-		BT4172	0.26	+1.0
5,491,415	+		BT4172	0.30	-1.2
5,491,427	-		BT4172	0.31	+0.6
5,491,465	+		BT4172	0.32	-0.4
5,491,479	-		BT4172	0.32	-0.6
5,491,488	+		BT4172	0.32	+1.3
5,491,567	+		BT4172	0.35	-1.2
5,491,619	+		BT4172	0.36	-1.4
5,491,626	+		BT4172	0.37	-1.0
5,491,667	+		BT4172	0.38	-0.1
5,491,667	+		BT4172	0.38	-1.2
5,491,750	-		BT4172	0.40	-1.0
5,491,783	+		BT4172	0.41	-1.3
5,491,783	+		BT4172	0.41	-1.4
5,491,784	-		BT4172	0.41	-1.3
5,491,787	+		BT4172	0.41	-1.8
5,491,787	+		BT4172	0.41	-0.2
5,491,787	+		BT4172	0.41	-2.5
5,491,814	+		BT4172	0.42	-0.0
5,491,853	+		BT4172	0.43	+1.6
5,491,872	+		BT4172	0.44	-2.3
5,491,873	-		BT4172	0.44	+0.2
5,491,949	+		BT4172	0.46	+1.6
5,491,974	-		BT4172	0.47	-0.8
5,491,974	-		BT4172	0.47	-0.7
5,492,023	-		BT4172	0.49	-0.5
5,492,060	+		BT4172	0.50	-0.2
5,492,141	+		BT4172	0.52	-0.9
5,492,153	-		BT4172	0.53	+1.0
5,492,338	+		BT4172	0.58	+1.0
5,492,380	-		BT4172	0.59	-1.8
5,492,432	+		BT4172	0.61	-0.3
5,492,444	+		BT4172	0.61	-1.3
5,492,515	+		BT4172	0.64	-0.8
5,492,536	-		BT4172	0.64	+0.8
5,492,586	-		BT4172	0.66	-1.1
5,492,625	+		BT4172	0.67	+0.4
5,492,625	+		BT4172	0.67	-0.1
5,492,626	-		BT4172	0.67	-1.8
5,492,638	-		BT4172	0.67	-1.1
5,492,651	-		BT4172	0.68	-0.0
5,492,682	+		BT4172	0.69	-1.0
5,492,703	+		BT4172	0.69	+0.3
5,492,703	+		BT4172	0.69	-1.5
5,492,736	-		BT4172	0.70	-0.9
5,492,736	-		BT4172	0.70	-0.4
5,492,738	-		BT4172	0.70	-0.0
5,492,738	-		BT4172	0.70	-0.3
5,492,774	+		BT4172	0.71	-0.6
5,492,775	-		BT4172	0.71	+0.4
5,492,775	-		BT4172	0.71	-0.0
5,492,840	+		BT4172	0.73	-0.0
5,492,841	-		BT4172	0.73	+0.1
5,492,841	-		BT4172	0.73	-1.4
5,492,910	-		BT4172	0.76	-2.2
5,492,910	-		BT4172	0.76	+0.8
5,492,977	-		BT4172	0.78	-0.6
5,493,025	+		BT4172	0.79	+1.0
5,493,047	-		BT4172	0.80	-0.3
5,493,055	+		BT4172	0.80	-1.7
5,493,063	-		BT4172	0.80	+0.2
5,493,098	+		BT4172	0.81	-0.2
5,493,142	-		BT4172	0.83	-1.0
5,493,324	+		BT4172	0.88	-0.7
5,493,335	-		BT4172	0.88	-1.0
5,493,342	-		BT4172	0.89	-0.6
5,493,342	-		BT4172	0.89	-1.0
5,493,342	-		BT4172	0.89	-0.3
5,493,345	-		BT4172	0.89	-1.1
5,493,345	-		BT4172	0.89	+2.0
5,493,376	+		BT4172	0.90	-0.9
5,493,376	+		BT4172	0.90	-1.1
5,493,380	+		BT4172	0.90	-1.3
5,493,380	+		BT4172	0.90	-2.3
5,493,381	-		BT4172	0.90	-0.8
5,493,381	-		BT4172	0.90	-0.4
5,493,432	+				-1.9
5,493,435	-				-1.5
5,493,493	-				+0.3
5,493,567	-				-1.6
5,493,684	+				-0.3
5,493,685	-				-0.0
5,493,686	+				-0.6
5,493,718	-				-0.7
5,493,774	+				+0.4
5,493,774	+				-0.7
5,493,806	-				-0.0
5,493,885	-				-0.0
5,493,891	-				+0.3
5,493,902	+				-0.6
5,493,902	+				-0.4
5,493,903	-				-1.0
5,493,904	+				-1.0
5,493,904	+				-0.6
5,493,977	-		BT4173	0.12	-0.3
5,493,977	-		BT4173	0.12	+2.6
5,493,986	+		BT4173	0.12	-1.5
5,494,058	+		BT4173	0.17	-0.0
5,494,071	-		BT4173	0.18	-1.1
5,494,078	-		BT4173	0.18	-0.5
5,494,090	-		BT4173	0.19	-0.2
5,494,148	-		BT4173	0.22	-0.4
5,494,148	-		BT4173	0.22	+1.6
5,494,159	+		BT4173	0.23	-0.7
5,494,164	-		BT4173	0.23	+1.0
5,494,239	+		BT4173	0.28	-2.5
5,494,271	+		BT4173	0.30	+0.7
5,494,272	-		BT4173	0.30	-0.0
5,494,305	+		BT4173	0.32	-1.0
5,494,358	+		BT4173	0.36	-0.6
5,494,378	-		BT4173	0.37	+1.0
5,494,461	-		BT4173	0.42	-0.6
5,494,575	+		BT4173	0.50	-1.5
5,494,576	-		BT4173	0.50	-1.8
5,494,642	+		BT4173	0.54	-1.8
5,494,643	-		BT4173	0.54	+0.6
5,494,649	+		BT4173	0.54	+0.5
5,494,650	-		BT4173	0.54	-1.3
5,494,650	-		BT4173	0.54	+0.8
5,494,652	-		BT4173	0.54	-0.2
5,494,661	+		BT4173	0.55	-0.9
5,494,662	-		BT4173	0.55	+1.0
5,494,697	+		BT4173	0.57	-0.0