Experiment: Post-colonization (Day 2) - Cage5;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0306 and BT0307 are separated by 128 nucleotides BT0307 and BT0308 are separated by 346 nucleotides
BT0306: BT0306 - outer membrane protein oprM precursor (NCBI ptt file), at 367,215 to 368,588
BT0306
BT0307: BT0307 - phosphofructokinase (NCBI ptt file), at 368,717 to 370,363
BT0307
BT0308: BT0308 - putative glycosyl hydrolase (NCBI ptt file), at 370,710 to 371,414
BT0308
Position (kb) 368
369
370
371 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 367.729 kb on - strand, within BT0306 at 367.729 kb on - strand, within BT0306 at 367.732 kb on - strand, within BT0306 at 367.780 kb on + strand, within BT0306 at 367.852 kb on - strand, within BT0306 at 367.868 kb on - strand, within BT0306 at 368.060 kb on - strand, within BT0306 at 368.228 kb on + strand, within BT0306 at 368.229 kb on - strand, within BT0306 at 368.231 kb on - strand, within BT0306 at 368.281 kb on - strand, within BT0306 at 368.293 kb on + strand, within BT0306 at 368.439 kb on + strand, within BT0306 at 368.440 kb on - strand, within BT0306 at 368.460 kb on + strand at 368.556 kb on + strand at 368.586 kb on + strand at 368.599 kb on + strand at 368.600 kb on - strand at 370.382 kb on + strand at 370.382 kb on + strand at 370.446 kb on - strand at 370.454 kb on + strand at 370.491 kb on + strand at 370.492 kb on - strand at 370.495 kb on + strand at 370.495 kb on + strand at 370.495 kb on + strand at 370.497 kb on + strand at 370.500 kb on + strand at 370.532 kb on + strand at 370.733 kb on - strand at 370.764 kb on - strand at 370.780 kb on - strand at 370.790 kb on + strand, within BT0308 at 370.931 kb on + strand, within BT0308 at 370.940 kb on + strand, within BT0308 at 370.996 kb on - strand, within BT0308 at 371.005 kb on - strand, within BT0308 at 371.006 kb on + strand, within BT0308 at 371.052 kb on - strand, within BT0308 at 371.161 kb on + strand, within BT0308 at 371.161 kb on + strand, within BT0308 at 371.162 kb on - strand, within BT0308 at 371.193 kb on + strand, within BT0308 at 371.193 kb on + strand, within BT0308 at 371.272 kb on - strand, within BT0308 at 371.298 kb on - strand, within BT0308 at 371.318 kb on + strand, within BT0308
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 2) - Cage5;Mouse1 remove 367,729 - BT0306 0.37 -2.1 367,729 - BT0306 0.37 -2.0 367,732 - BT0306 0.38 -1.0 367,780 + BT0306 0.41 -3.5 367,852 - BT0306 0.46 -1.7 367,868 - BT0306 0.48 -1.5 368,060 - BT0306 0.61 -2.3 368,228 + BT0306 0.74 -2.4 368,229 - BT0306 0.74 -1.0 368,231 - BT0306 0.74 -1.1 368,281 - BT0306 0.78 -0.8 368,293 + BT0306 0.78 -0.5 368,439 + BT0306 0.89 -0.5 368,440 - BT0306 0.89 -0.5 368,460 + -1.2 368,556 + -1.8 368,586 + +0.0 368,599 + -1.4 368,600 - +1.5 370,382 + -0.7 370,382 + -1.2 370,446 - +0.0 370,454 + +2.6 370,491 + -0.5 370,492 - -1.1 370,495 + -0.5 370,495 + -0.5 370,495 + +0.5 370,497 + -0.0 370,500 + -1.8 370,532 + -1.0 370,733 - -1.4 370,764 - +0.0 370,780 - -2.4 370,790 + BT0308 0.11 -2.3 370,931 + BT0308 0.31 -0.3 370,940 + BT0308 0.33 -1.0 370,996 - BT0308 0.41 -1.5 371,005 - BT0308 0.42 +0.0 371,006 + BT0308 0.42 +0.6 371,052 - BT0308 0.49 -3.7 371,161 + BT0308 0.64 -0.4 371,161 + BT0308 0.64 -1.5 371,162 - BT0308 0.64 -1.0 371,193 + BT0308 0.69 -0.4 371,193 + BT0308 0.69 -2.5 371,272 - BT0308 0.80 -2.5 371,298 - BT0308 0.83 +1.0 371,318 + BT0308 0.86 -0.8
Or see this region's nucleotide sequence