Experiment: Post-colonization (Day 2) - Cage5;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0305 and BT0306 overlap by 1 nucleotides BT0306 and BT0307 are separated by 128 nucleotides
BT0305: BT0305 - putative aminoglycoside efflux pump (Acriflavine resistance protein) (NCBI ptt file), at 364,111 to 367,215
BT0305
BT0306: BT0306 - outer membrane protein oprM precursor (NCBI ptt file), at 367,215 to 368,588
BT0306
BT0307: BT0307 - phosphofructokinase (NCBI ptt file), at 368,717 to 370,363
BT0307
Position (kb) 367
368
369 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 366.219 kb on + strand, within BT0305 at 366.394 kb on + strand, within BT0305 at 366.395 kb on - strand, within BT0305 at 366.401 kb on + strand, within BT0305 at 366.406 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.481 kb on - strand, within BT0305 at 366.487 kb on - strand, within BT0305 at 366.556 kb on - strand, within BT0305 at 366.795 kb on - strand, within BT0305 at 366.795 kb on - strand, within BT0305 at 366.887 kb on + strand, within BT0305 at 367.180 kb on - strand at 367.231 kb on + strand at 367.232 kb on - strand at 367.235 kb on + strand at 367.236 kb on - strand at 367.241 kb on + strand at 367.291 kb on - strand at 367.313 kb on - strand at 367.405 kb on + strand, within BT0306 at 367.433 kb on + strand, within BT0306 at 367.729 kb on - strand, within BT0306 at 367.729 kb on - strand, within BT0306 at 367.732 kb on - strand, within BT0306 at 367.780 kb on + strand, within BT0306 at 367.852 kb on - strand, within BT0306 at 367.868 kb on - strand, within BT0306 at 368.060 kb on - strand, within BT0306 at 368.228 kb on + strand, within BT0306 at 368.229 kb on - strand, within BT0306 at 368.231 kb on - strand, within BT0306 at 368.281 kb on - strand, within BT0306 at 368.293 kb on + strand, within BT0306 at 368.439 kb on + strand, within BT0306 at 368.440 kb on - strand, within BT0306 at 368.460 kb on + strand at 368.556 kb on + strand at 368.586 kb on + strand at 368.599 kb on + strand at 368.600 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 2) - Cage5;Mouse1 remove 366,219 + BT0305 0.68 -2.6 366,394 + BT0305 0.74 -1.4 366,395 - BT0305 0.74 -1.3 366,401 + BT0305 0.74 -3.0 366,406 - BT0305 0.74 +0.2 366,481 - BT0305 0.76 +1.3 366,481 - BT0305 0.76 -1.4 366,481 - BT0305 0.76 -1.5 366,481 - BT0305 0.76 +0.5 366,487 - BT0305 0.77 -1.9 366,556 - BT0305 0.79 -2.2 366,795 - BT0305 0.86 -2.4 366,795 - BT0305 0.86 -0.3 366,887 + BT0305 0.89 -0.5 367,180 - -1.0 367,231 + -0.5 367,232 - +0.0 367,235 + -1.7 367,236 - -1.1 367,241 + +1.6 367,291 - -1.3 367,313 - -0.4 367,405 + BT0306 0.14 +0.6 367,433 + BT0306 0.16 -2.0 367,729 - BT0306 0.37 -2.1 367,729 - BT0306 0.37 -2.0 367,732 - BT0306 0.38 -1.0 367,780 + BT0306 0.41 -3.5 367,852 - BT0306 0.46 -1.7 367,868 - BT0306 0.48 -1.5 368,060 - BT0306 0.61 -2.3 368,228 + BT0306 0.74 -2.4 368,229 - BT0306 0.74 -1.0 368,231 - BT0306 0.74 -1.1 368,281 - BT0306 0.78 -0.8 368,293 + BT0306 0.78 -0.5 368,439 + BT0306 0.89 -0.5 368,440 - BT0306 0.89 -0.5 368,460 + -1.2 368,556 + -1.8 368,586 + +0.0 368,599 + -1.4 368,600 - +1.5
Or see this region's nucleotide sequence