Experiment: Post-colonization (Day 1) - Cage6;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0765 and BT0766 are separated by 151 nucleotides BT0766 and BT0767 are separated by 119 nucleotides
BT0765: BT0765 - putative protease (NCBI ptt file), at 955,280 to 956,362
BT0765
BT0766: BT0766 - conserved hypothetical protein (NCBI ptt file), at 956,514 to 957,317
BT0766
BT0767: BT0767 - putative para-aminobenzoate synthase component I (NCBI ptt file), at 957,437 to 958,429
BT0767
Position (kb) 956
957
958 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 955.588 kb on + strand, within BT0765 at 955.652 kb on + strand, within BT0765 at 955.763 kb on - strand, within BT0765 at 955.849 kb on + strand, within BT0765 at 955.853 kb on - strand, within BT0765 at 956.052 kb on + strand, within BT0765 at 956.052 kb on + strand, within BT0765 at 956.056 kb on + strand, within BT0765 at 956.056 kb on + strand, within BT0765 at 956.057 kb on - strand, within BT0765 at 956.066 kb on + strand, within BT0765 at 956.104 kb on + strand, within BT0765 at 956.141 kb on + strand, within BT0765 at 956.218 kb on + strand at 956.228 kb on - strand, within BT0765 at 956.314 kb on + strand at 956.339 kb on + strand at 956.371 kb on + strand at 956.371 kb on + strand at 956.371 kb on + strand at 956.371 kb on + strand at 956.405 kb on - strand at 956.471 kb on + strand at 956.482 kb on - strand at 956.541 kb on + strand at 956.542 kb on - strand at 956.577 kb on - strand at 956.583 kb on - strand at 956.619 kb on - strand, within BT0766 at 956.728 kb on - strand, within BT0766 at 956.777 kb on + strand, within BT0766 at 956.858 kb on + strand, within BT0766 at 956.894 kb on + strand, within BT0766 at 956.914 kb on - strand, within BT0766 at 956.922 kb on - strand, within BT0766 at 956.958 kb on - strand, within BT0766 at 956.969 kb on + strand, within BT0766 at 956.970 kb on - strand, within BT0766 at 957.002 kb on + strand, within BT0766 at 957.081 kb on + strand, within BT0766 at 957.082 kb on - strand, within BT0766 at 957.183 kb on + strand, within BT0766 at 957.183 kb on + strand, within BT0766 at 957.249 kb on - strand at 957.284 kb on + strand at 957.445 kb on - strand at 957.581 kb on + strand, within BT0767 at 957.582 kb on - strand, within BT0767 at 957.583 kb on + strand, within BT0767 at 957.584 kb on - strand, within BT0767 at 957.684 kb on - strand, within BT0767 at 957.717 kb on + strand, within BT0767 at 957.791 kb on - strand, within BT0767 at 957.816 kb on - strand, within BT0767 at 957.982 kb on + strand, within BT0767 at 957.983 kb on - strand, within BT0767 at 958.011 kb on + strand, within BT0767 at 958.011 kb on + strand, within BT0767 at 958.017 kb on + strand, within BT0767 at 958.046 kb on + strand, within BT0767 at 958.054 kb on + strand, within BT0767 at 958.131 kb on - strand, within BT0767 at 958.291 kb on + strand, within BT0767 at 958.306 kb on - strand, within BT0767
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 1) - Cage6;Mouse1 remove 955,588 + BT0765 0.28 -0.3 955,652 + BT0765 0.34 -0.8 955,763 - BT0765 0.45 -0.9 955,849 + BT0765 0.53 +1.4 955,853 - BT0765 0.53 +0.1 956,052 + BT0765 0.71 -0.9 956,052 + BT0765 0.71 -1.6 956,056 + BT0765 0.72 -0.9 956,056 + BT0765 0.72 -1.6 956,057 - BT0765 0.72 -0.9 956,066 + BT0765 0.73 -1.3 956,104 + BT0765 0.76 -0.7 956,141 + BT0765 0.80 +2.1 956,218 + +1.0 956,228 - BT0765 0.88 -1.1 956,314 + -0.3 956,339 + -2.4 956,371 + -0.9 956,371 + +0.1 956,371 + -0.9 956,371 + -0.8 956,405 - +0.4 956,471 + +1.5 956,482 - -0.3 956,541 + -0.9 956,542 - -0.6 956,577 - -1.3 956,583 - -0.9 956,619 - BT0766 0.13 -1.1 956,728 - BT0766 0.27 -1.5 956,777 + BT0766 0.33 -1.1 956,858 + BT0766 0.43 -1.8 956,894 + BT0766 0.47 -0.3 956,914 - BT0766 0.50 -1.8 956,922 - BT0766 0.51 +1.7 956,958 - BT0766 0.55 -1.8 956,969 + BT0766 0.57 -0.3 956,970 - BT0766 0.57 -0.6 957,002 + BT0766 0.61 -0.6 957,081 + BT0766 0.71 -0.9 957,082 - BT0766 0.71 -2.8 957,183 + BT0766 0.83 -2.2 957,183 + BT0766 0.83 -1.6 957,249 - -1.5 957,284 + -0.6 957,445 - +0.9 957,581 + BT0767 0.15 -0.3 957,582 - BT0767 0.15 +1.1 957,583 + BT0767 0.15 +1.0 957,584 - BT0767 0.15 -2.0 957,684 - BT0767 0.25 +0.4 957,717 + BT0767 0.28 -1.5 957,791 - BT0767 0.36 -0.9 957,816 - BT0767 0.38 -1.5 957,982 + BT0767 0.55 +2.3 957,983 - BT0767 0.55 -1.3 958,011 + BT0767 0.58 -1.8 958,011 + BT0767 0.58 -2.1 958,017 + BT0767 0.58 -0.3 958,046 + BT0767 0.61 -1.1 958,054 + BT0767 0.62 -1.4 958,131 - BT0767 0.70 +0.8 958,291 + BT0767 0.86 -0.8 958,306 - BT0767 0.88 +1.7
Or see this region's nucleotide sequence