Experiment: Post-colonization (Day 1) - Cage6;Mouse1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0510 and BT0511 overlap by 4 nucleotides BT0511 and BT0512 are separated by 38 nucleotides BT0512 and BT0513 are separated by 44 nucleotides
BT0510: BT0510 - putative heme biosynthesis protein (NCBI ptt file), at 633,782 to 634,882
BT0510
BT0511: BT0511 - hypothetical protein (NCBI ptt file), at 634,879 to 635,331
BT0511
BT0512: BT0512 - hypothetical protein (NCBI ptt file), at 635,370 to 635,939
BT0512
BT0513: BT0513 - hypothetical protein (NCBI ptt file), at 635,984 to 636,415
BT0513
Position (kb) 634
635
636 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 633.962 kb on + strand, within BT0510 at 633.962 kb on + strand, within BT0510 at 633.988 kb on + strand, within BT0510 at 634.091 kb on - strand, within BT0510 at 634.097 kb on + strand, within BT0510 at 634.111 kb on - strand, within BT0510 at 634.262 kb on + strand, within BT0510 at 634.263 kb on - strand, within BT0510 at 634.291 kb on + strand, within BT0510 at 634.373 kb on - strand at 634.475 kb on - strand, within BT0510 at 634.475 kb on - strand, within BT0510 at 634.477 kb on + strand, within BT0510 at 634.602 kb on - strand, within BT0510 at 634.602 kb on - strand, within BT0510 at 634.624 kb on + strand, within BT0510 at 634.635 kb on - strand, within BT0510 at 634.635 kb on - strand, within BT0510 at 634.839 kb on - strand at 634.873 kb on + strand at 634.905 kb on + strand at 634.909 kb on + strand at 634.910 kb on - strand at 634.964 kb on + strand, within BT0511 at 635.049 kb on + strand, within BT0511 at 635.060 kb on - strand, within BT0511 at 635.060 kb on - strand, within BT0511 at 635.074 kb on - strand, within BT0511 at 635.075 kb on + strand, within BT0511 at 635.076 kb on - strand, within BT0511 at 635.083 kb on + strand, within BT0511 at 635.206 kb on + strand, within BT0511 at 635.241 kb on - strand, within BT0511 at 635.338 kb on - strand at 635.368 kb on - strand at 635.524 kb on - strand, within BT0512 at 635.534 kb on + strand, within BT0512 at 635.534 kb on + strand, within BT0512 at 635.536 kb on + strand, within BT0512 at 635.597 kb on - strand, within BT0512 at 635.597 kb on - strand, within BT0512 at 635.607 kb on - strand, within BT0512 at 635.615 kb on + strand, within BT0512 at 635.763 kb on - strand, within BT0512 at 635.840 kb on + strand, within BT0512 at 635.854 kb on - strand, within BT0512 at 635.854 kb on - strand, within BT0512 at 635.939 kb on + strand at 635.943 kb on + strand at 636.008 kb on + strand at 636.093 kb on - strand, within BT0513 at 636.269 kb on + strand, within BT0513 at 636.274 kb on + strand, within BT0513 at 636.275 kb on - strand, within BT0513 at 636.280 kb on - strand, within BT0513
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 1) - Cage6;Mouse1 remove 633,962 + BT0510 0.16 -2.5 633,962 + BT0510 0.16 -0.6 633,988 + BT0510 0.19 -2.0 634,091 - BT0510 0.28 -1.8 634,097 + BT0510 0.29 +0.4 634,111 - BT0510 0.30 -0.1 634,262 + BT0510 0.44 +2.0 634,263 - BT0510 0.44 -0.9 634,291 + BT0510 0.46 -0.3 634,373 - +0.1 634,475 - BT0510 0.63 +0.1 634,475 - BT0510 0.63 -1.6 634,477 + BT0510 0.63 -0.9 634,602 - BT0510 0.74 -1.1 634,602 - BT0510 0.74 -0.1 634,624 + BT0510 0.76 -0.3 634,635 - BT0510 0.77 -0.3 634,635 - BT0510 0.77 -0.3 634,839 - +1.2 634,873 + -1.2 634,905 + -2.2 634,909 + -1.3 634,910 - -4.5 634,964 + BT0511 0.19 -0.3 635,049 + BT0511 0.38 +1.0 635,060 - BT0511 0.40 -0.9 635,060 - BT0511 0.40 +1.4 635,074 - BT0511 0.43 -0.0 635,075 + BT0511 0.43 -2.2 635,076 - BT0511 0.43 +0.7 635,083 + BT0511 0.45 -1.7 635,206 + BT0511 0.72 +0.8 635,241 - BT0511 0.80 +1.7 635,338 - +0.5 635,368 - +1.7 635,524 - BT0512 0.27 +2.4 635,534 + BT0512 0.29 -1.5 635,534 + BT0512 0.29 -0.0 635,536 + BT0512 0.29 +1.7 635,597 - BT0512 0.40 +1.3 635,597 - BT0512 0.40 -1.6 635,607 - BT0512 0.42 -0.3 635,615 + BT0512 0.43 +1.3 635,763 - BT0512 0.69 -1.1 635,840 + BT0512 0.82 +1.1 635,854 - BT0512 0.85 +1.7 635,854 - BT0512 0.85 -2.2 635,939 + -0.6 635,943 + -1.1 636,008 + +0.6 636,093 - BT0513 0.25 -1.1 636,269 + BT0513 0.66 -0.9 636,274 + BT0513 0.67 -1.3 636,275 - BT0513 0.67 -1.1 636,280 - BT0513 0.69 -3.3
Or see this region's nucleotide sequence