Experiment: Post-colonization (Day 1) - Cage4;Mouse3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BT0587 and BT0588 are separated by 47 nucleotides BT0588 and BT0589 are separated by 85 nucleotides
BT0587: BT0587 - prolyl oligopeptidase family protein (NCBI ptt file), at 724,150 to 726,249
BT0587
BT0588: BT0588 - BexA: efflux pump for ciprofloxacin, lomefloxacin, and paraquat <small>(from data)</small>, at 726,297 to 727,628
BT0588
BT0589: BT0589 - conserved hypothetical protein (NCBI ptt file), at 727,714 to 729,570
BT0589
Position (kb) 726
727
728 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 725.345 kb on + strand, within BT0587 at 725.346 kb on - strand, within BT0587 at 725.403 kb on + strand, within BT0587 at 725.438 kb on + strand, within BT0587 at 725.439 kb on - strand, within BT0587 at 725.439 kb on - strand, within BT0587 at 725.439 kb on - strand, within BT0587 at 725.465 kb on + strand, within BT0587 at 725.466 kb on - strand, within BT0587 at 725.584 kb on + strand, within BT0587 at 725.672 kb on + strand, within BT0587 at 725.673 kb on - strand, within BT0587 at 725.673 kb on - strand, within BT0587 at 725.673 kb on - strand, within BT0587 at 725.673 kb on - strand, within BT0587 at 725.691 kb on + strand at 725.817 kb on - strand, within BT0587 at 725.833 kb on - strand, within BT0587 at 726.007 kb on - strand, within BT0587 at 726.023 kb on - strand, within BT0587 at 726.032 kb on + strand, within BT0587 at 726.033 kb on - strand, within BT0587 at 726.205 kb on + strand at 726.228 kb on + strand at 726.229 kb on - strand at 726.333 kb on - strand at 726.334 kb on + strand at 726.334 kb on + strand at 726.425 kb on - strand at 726.434 kb on - strand, within BT0588 at 726.443 kb on - strand, within BT0588 at 726.538 kb on - strand, within BT0588 at 726.541 kb on + strand, within BT0588 at 726.542 kb on - strand, within BT0588 at 726.562 kb on - strand, within BT0588 at 726.605 kb on - strand, within BT0588 at 726.643 kb on - strand, within BT0588 at 726.872 kb on + strand, within BT0588 at 726.970 kb on + strand, within BT0588 at 726.971 kb on - strand, within BT0588 at 727.000 kb on + strand, within BT0588 at 727.001 kb on - strand, within BT0588 at 727.001 kb on - strand, within BT0588 at 727.103 kb on + strand, within BT0588 at 727.242 kb on - strand, within BT0588 at 727.242 kb on - strand, within BT0588 at 727.391 kb on - strand, within BT0588 at 727.610 kb on - strand at 727.616 kb on - strand at 727.628 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Post-colonization (Day 1) - Cage4;Mouse3 remove 725,345 + BT0587 0.57 +0.4 725,346 - BT0587 0.57 -1.5 725,403 + BT0587 0.60 -0.2 725,438 + BT0587 0.61 -0.7 725,439 - BT0587 0.61 -1.0 725,439 - BT0587 0.61 +0.6 725,439 - BT0587 0.61 -0.6 725,465 + BT0587 0.63 +0.0 725,466 - BT0587 0.63 -0.9 725,584 + BT0587 0.68 +0.4 725,672 + BT0587 0.72 -0.6 725,673 - BT0587 0.73 -0.3 725,673 - BT0587 0.73 -2.0 725,673 - BT0587 0.73 -1.6 725,673 - BT0587 0.73 -0.9 725,691 + -2.2 725,817 - BT0587 0.79 -2.8 725,833 - BT0587 0.80 +0.6 726,007 - BT0587 0.88 -1.6 726,023 - BT0587 0.89 +0.0 726,032 + BT0587 0.90 +0.4 726,033 - BT0587 0.90 -0.0 726,205 + +0.0 726,228 + -2.0 726,229 - -2.8 726,333 - +0.5 726,334 + -1.0 726,334 + +0.0 726,425 - -2.8 726,434 - BT0588 0.10 -1.8 726,443 - BT0588 0.11 -2.9 726,538 - BT0588 0.18 -1.8 726,541 + BT0588 0.18 -0.9 726,542 - BT0588 0.18 -2.3 726,562 - BT0588 0.20 -0.6 726,605 - BT0588 0.23 +0.0 726,643 - BT0588 0.26 -1.0 726,872 + BT0588 0.43 -1.8 726,970 + BT0588 0.51 -1.3 726,971 - BT0588 0.51 -1.3 727,000 + BT0588 0.53 +0.0 727,001 - BT0588 0.53 -2.0 727,001 - BT0588 0.53 -1.8 727,103 + BT0588 0.61 -0.9 727,242 - BT0588 0.71 +0.4 727,242 - BT0588 0.71 -3.0 727,391 - BT0588 0.82 -1.0 727,610 - -0.1 727,616 - +0.0 727,628 + -1.1
Or see this region's nucleotide sequence