Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT3951

Experiment: Post-colonization (Day 1) - Cage3;Mouse1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Post-colonization (Day 1) - Cage3;Mouse1
5,127,961	+				-1.3
5,127,996	-				-1.3
5,128,029	-				-0.5
5,128,068	+				-1.3
5,128,068	+				-1.1
5,128,068	+				-2.8
5,128,137	+				+1.1
5,128,152	+				-2.1
5,128,153	-				-0.4
5,128,156	-				-2.6
5,128,179	-				-0.3
5,128,205	+				-1.8
5,128,230	-				-0.3
5,128,246	+				-1.8
5,128,246	-				-2.4
5,128,299	-				-1.8
5,128,306	+				+0.1
5,128,307	-				+1.5
5,128,349	+				-1.3
5,128,353	+				-1.3
5,128,354	-				+1.6
5,128,439	+				-1.6
5,128,440	-				+0.1
5,128,440	-				-1.4
5,128,440	-				-0.9
5,128,440	-				-1.9
5,128,440	-				-0.6
5,128,480	+				+0.4
5,128,480	+				-1.3
5,128,481	-				-1.8
5,128,485	-				-0.2
5,128,485	-				-1.0
5,128,583	+		BT3951	0.10	-0.8
5,128,583	+		BT3951	0.10	-1.8
5,128,586	+		BT3951	0.10	-1.5
5,128,586	+		BT3951	0.10	-1.8
5,128,587	-		BT3951	0.10	-0.5
5,128,617	+		BT3951	0.11	-1.4
5,128,620	+		BT3951	0.11	-0.2
5,128,620	+		BT3951	0.11	-0.8
5,128,621	-		BT3951	0.11	+0.7
5,128,668	-		BT3951	0.12	+0.3
5,128,717	+		BT3951	0.14	-0.8
5,128,720	-		BT3951	0.14	-0.2
5,128,805	+		BT3951	0.16	-0.5
5,128,805	+		BT3951	0.16	-0.9
5,128,840	-		BT3951	0.17	+1.4
5,128,840	-		BT3951	0.17	-0.4
5,128,899	+		BT3951	0.18	-1.3
5,128,900	-		BT3951	0.18	-1.1
5,128,904	+		BT3951	0.18	-1.5
5,128,905	-		BT3951	0.18	+0.5
5,128,907	-		BT3951	0.18	-0.1
5,128,920	-		BT3951	0.19	+1.1
5,128,935	-		BT3951	0.19	-0.6
5,128,955	+		BT3951	0.20	-0.9
5,128,956	-				+1.1
5,128,960	-		BT3951	0.20	+1.7
5,128,981	+		BT3951	0.20	-2.1
5,129,052	+		BT3951	0.22	+0.2
5,129,053	-		BT3951	0.22	-0.5
5,129,079	-		BT3951	0.23	-2.4
5,129,084	+		BT3951	0.23	-1.8
5,129,084	+		BT3951	0.23	-1.5
5,129,097	+		BT3951	0.23	-2.1
5,129,098	-		BT3951	0.23	-0.8
5,129,098	-		BT3951	0.23	-1.9
5,129,098	-		BT3951	0.23	-0.5
5,129,153	+		BT3951	0.25	-2.1
5,129,154	-		BT3951	0.25	-2.1
5,129,169	+		BT3951	0.25	-0.9
5,129,174	+		BT3951	0.25	-1.3
5,129,184	-		BT3951	0.25	-1.3
5,129,195	-		BT3951	0.26	-1.5
5,129,373	+		BT3951	0.30	-0.9
5,129,374	-		BT3951	0.30	-2.4
5,129,401	+		BT3951	0.31	+0.1
5,129,404	-		BT3951	0.31	-0.3
5,129,426	+		BT3951	0.31	+0.3
5,129,571	-		BT3951	0.35	-0.3
5,129,571	-		BT3951	0.35	-1.0
5,129,580	+		BT3951	0.35	-1.1
5,129,608	-		BT3951	0.36	-1.9
5,129,615	-		BT3951	0.36	-0.3
5,129,625	-		BT3951	0.36	+0.8
5,129,704	-		BT3951	0.38	+2.5
5,129,705	+		BT3951	0.38	+0.1
5,129,705	+		BT3951	0.38	-0.5
5,129,708	+		BT3951	0.38	-1.0
5,129,708	+		BT3951	0.38	-0.4
5,129,709	-		BT3951	0.38	+0.6
5,129,709	-		BT3951	0.38	+0.6
5,129,790	+		BT3951	0.41	+0.1
5,129,791	-		BT3951	0.41	-0.9
5,129,800	-		BT3951	0.41	-1.8
5,129,837	+		BT3951	0.42	-2.5
5,129,871	+		BT3951	0.43	+0.1
5,129,871	+		BT3951	0.43	-1.8
5,129,909	+		BT3951	0.44	+1.0
5,129,910	-		BT3951	0.44	-0.1
5,130,066	+		BT3951	0.47	-0.3
5,130,067	-		BT3951	0.47	-1.7
5,130,067	-		BT3951	0.47	+1.1
5,130,069	+		BT3951	0.48	+0.2
5,130,091	+		BT3951	0.48	-0.9
5,130,131	+		BT3951	0.49	+0.6
5,130,132	-		BT3951	0.49	-1.6
5,130,239	-		BT3951	0.52	-0.8
5,130,271	-		BT3951	0.53	-1.3
5,130,326	-		BT3951	0.54	+1.1
5,130,337	+		BT3951	0.54	-1.5
5,130,338	-		BT3951	0.54	-1.3
5,130,369	+		BT3951	0.55	-1.0
5,130,375	+		BT3951	0.55	-1.4
5,130,376	-		BT3951	0.55	-1.8
5,130,376	-		BT3951	0.55	+0.3
5,130,435	+		BT3951	0.57	-0.4
5,130,505	-		BT3951	0.59	-0.6
5,130,558	+		BT3951	0.60	-2.9
5,130,573	+		BT3951	0.60	+0.7
5,130,576	-		BT3951	0.60	-1.5
5,130,576	-		BT3951	0.60	-0.8
5,130,580	+		BT3951	0.60	+0.1
5,130,580	+		BT3951	0.60	-1.8
5,130,599	-		BT3951	0.61	-0.7
5,130,603	+		BT3951	0.61	-1.8
5,130,681	-		BT3951	0.63	-1.3
5,130,702	+		BT3951	0.63	-1.3
5,130,703	-		BT3951	0.63	-0.9
5,130,731	+		BT3951	0.64	-1.3
5,130,983	-		BT3951	0.71	-0.9
5,131,057	-		BT3951	0.72	+0.6
5,131,059	-		BT3951	0.72	-3.2
5,131,115	+		BT3951	0.74	+0.1
5,131,115	+		BT3951	0.74	-0.7
5,131,217	+		BT3951	0.76	+0.1
5,131,218	-		BT3951	0.76	-1.4
5,131,274	+		BT3951	0.78	-0.2
5,131,289	+		BT3951	0.78	-1.0
5,131,289	+		BT3951	0.78	-0.1
5,131,290	-		BT3951	0.78	+0.5
5,131,292	-		BT3951	0.78	+3.1
5,131,323	-		BT3951	0.79	+1.8
5,131,438	-		BT3951	0.82	-1.5
5,131,488	-		BT3951	0.83	-2.3
5,131,504	+		BT3951	0.84	-0.7
5,131,517	+		BT3951	0.84	+0.1
5,131,518	-		BT3951	0.84	+1.1
5,131,523	+		BT3951	0.84	-2.6
5,131,523	+		BT3951	0.84	-1.9
5,131,524	-		BT3951	0.84	+0.3
5,131,553	-		BT3951	0.85	+0.9
5,131,553	-		BT3951	0.85	+0.1
5,131,557	+		BT3951	0.85	-2.1
5,131,565	+		BT3951	0.85	-0.5
5,131,578	-		BT3951	0.86	+0.1
5,131,668	-		BT3951	0.88	+0.1
5,131,680	+		BT3951	0.88	+0.1
5,131,685	+		BT3951	0.88	-0.1
5,131,685	+		BT3951	0.88	-0.9
5,131,685	+		BT3951	0.88	-0.9
5,131,687	+		BT3951	0.88	-0.9
5,131,688	-		BT3951	0.88	-1.3
5,131,722	+		BT3951	0.89	-0.9
5,131,749	+		BT3951	0.90	-0.5
5,131,752	-		BT3951	0.90	+1.0
5,131,782	-				-2.5
5,131,782	-				-1.1
5,131,915	-				-3.0
5,131,926	-				-2.9
5,132,038	+				-0.4
5,132,039	-				-2.3
5,132,039	-				+0.8
5,132,039	-				+1.1
5,132,042	+				-0.3
5,132,043	-				+2.1
5,132,043	-				+0.5
5,132,059	-				-1.5
5,132,099	+				-0.9
5,132,104	+				-1.3
5,132,105	-				-0.8
5,132,105	-				+0.1
5,132,106	+				-1.8
5,132,108	+				+1.1
5,132,109	-				-2.3
5,132,109	-				-2.3
5,132,178	-				-0.5
5,132,283	+				+0.1
5,132,361	+				-0.9
5,132,402	-				-0.9
5,132,423	+				-3.4
5,132,427	-				-0.7
5,132,496	+				+0.3
5,132,508	+				-0.2
5,132,512	+				+0.2
5,132,519	-				+0.1
5,132,626	+				-0.5
5,132,627	-				+2.1
5,132,632	+				-1.3
5,132,651	+				+0.4
5,132,691	+				-0.5
5,132,696	+				-1.9
5,132,697	-				-1.1
5,132,697	-				-0.4
5,132,697	-				-1.5
5,132,700	+				-2.1
5,132,700	+				-0.3
5,132,701	-				-1.4
5,132,705	+				+0.1
5,132,707	+				-1.3
5,132,707	+				-0.9
5,132,721	+				-0.9
5,132,722	-				-0.5
5,132,815	+		BT3952	0.12	-2.0
5,132,820	+		BT3952	0.12	-1.1
5,132,863	+		BT3952	0.13	+0.7
5,132,864	-		BT3952	0.13	-0.3
5,132,980	-		BT3952	0.17	+0.1
5,132,980	-		BT3952	0.17	+0.1
5,133,030	+		BT3952	0.18	+0.5
5,133,031	-		BT3952	0.18	+0.1
5,133,050	-		BT3952	0.19	+1.1
5,133,108	+		BT3952	0.21	-2.4
5,133,109	-		BT3952	0.21	-1.2
5,133,109	-		BT3952	0.21	-2.8
5,133,110	+		BT3952	0.21	-0.7
5,133,117	+		BT3952	0.21	-0.9