Experiment: growth in full media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13015 and SGL_RS13020 are separated by 124 nucleotides SGL_RS13020 and SGL_RS13025 overlap by 17 nucleotides SGL_RS13025 and SGL_RS13030 are separated by 231 nucleotides SGL_RS13030 and SGL_RS13035 are separated by 131 nucleotides SGL_RS13035 and SGL_RS13040 are separated by 36 nucleotides
SGL_RS13015: SGL_RS13015 - L,D-transpeptidase, at 2,393,493 to 2,394,107
_RS13015
SGL_RS13020: SGL_RS13020 - DUF433 domain-containing protein, at 2,394,232 to 2,394,552
_RS13020
SGL_RS13025: SGL_RS13025 - DUF5615 family PIN-like protein, at 2,394,536 to 2,394,871
_RS13025
SGL_RS13030: SGL_RS13030 - ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B, at 2,395,103 to 2,396,629
_RS13030
SGL_RS13035: SGL_RS13035 - TrkA family potassium uptake protein, at 2,396,761 to 2,397,441
_RS13035
SGL_RS13040: SGL_RS13040 - iron uptake porin, at 2,397,478 to 2,399,118
_RS13040
Position (kb)
2395
2396
2397 Strain fitness (log2 ratio)
-1
0
1 at 2394.164 kb on - strand at 2394.393 kb on - strand, within SGL_RS13020 at 2394.490 kb on - strand, within SGL_RS13020 at 2394.881 kb on - strand at 2394.916 kb on + strand at 2395.383 kb on + strand, within SGL_RS13030 at 2395.706 kb on + strand, within SGL_RS13030 at 2395.756 kb on + strand, within SGL_RS13030 at 2395.822 kb on - strand, within SGL_RS13030 at 2395.894 kb on - strand, within SGL_RS13030 at 2396.014 kb on + strand, within SGL_RS13030 at 2396.031 kb on - strand, within SGL_RS13030 at 2396.032 kb on - strand, within SGL_RS13030 at 2396.097 kb on - strand, within SGL_RS13030 at 2396.138 kb on + strand, within SGL_RS13030 at 2396.156 kb on + strand, within SGL_RS13030 at 2396.255 kb on + strand, within SGL_RS13030 at 2396.324 kb on + strand, within SGL_RS13030 at 2396.376 kb on + strand, within SGL_RS13030 at 2396.376 kb on - strand, within SGL_RS13030 at 2396.527 kb on + strand at 2396.632 kb on - strand at 2396.632 kb on - strand at 2396.713 kb on - strand at 2396.803 kb on - strand at 2396.857 kb on + strand, within SGL_RS13035 at 2396.865 kb on - strand, within SGL_RS13035 at 2397.092 kb on + strand, within SGL_RS13035 at 2397.235 kb on + strand, within SGL_RS13035 at 2397.309 kb on + strand, within SGL_RS13035 at 2397.342 kb on + strand, within SGL_RS13035
Per-strain Table
Position Strand Gene LocusTag Fraction growth in full media remove 2,394,164 - +0.1 2,394,393 - SGL_RS13020 0.50 -0.4 2,394,490 - SGL_RS13020 0.80 -0.4 2,394,881 - -0.3 2,394,916 + +0.0 2,395,383 + SGL_RS13030 0.18 +0.3 2,395,706 + SGL_RS13030 0.39 -1.1 2,395,756 + SGL_RS13030 0.43 +0.2 2,395,822 - SGL_RS13030 0.47 -0.7 2,395,894 - SGL_RS13030 0.52 +0.2 2,396,014 + SGL_RS13030 0.60 +0.8 2,396,031 - SGL_RS13030 0.61 -0.1 2,396,032 - SGL_RS13030 0.61 -0.6 2,396,097 - SGL_RS13030 0.65 -0.3 2,396,138 + SGL_RS13030 0.68 -0.2 2,396,156 + SGL_RS13030 0.69 -0.0 2,396,255 + SGL_RS13030 0.75 +0.7 2,396,324 + SGL_RS13030 0.80 -0.3 2,396,376 + SGL_RS13030 0.83 -0.3 2,396,376 - SGL_RS13030 0.83 -0.2 2,396,527 + -0.2 2,396,632 - -0.7 2,396,632 - +0.3 2,396,713 - -0.3 2,396,803 - +0.0 2,396,857 + SGL_RS13035 0.14 -0.0 2,396,865 - SGL_RS13035 0.15 +0.3 2,397,092 + SGL_RS13035 0.49 +0.2 2,397,235 + SGL_RS13035 0.70 -0.3 2,397,309 + SGL_RS13035 0.80 -0.0 2,397,342 + SGL_RS13035 0.85 +0.3
Or see this region's nucleotide sequence