Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13030

Experiment: growth in full media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13015 and SGL_RS13020 are separated by 124 nucleotidesSGL_RS13020 and SGL_RS13025 overlap by 17 nucleotidesSGL_RS13025 and SGL_RS13030 are separated by 231 nucleotidesSGL_RS13030 and SGL_RS13035 are separated by 131 nucleotidesSGL_RS13035 and SGL_RS13040 are separated by 36 nucleotides SGL_RS13015: SGL_RS13015 - L,D-transpeptidase, at 2,393,493 to 2,394,107 _RS13015 SGL_RS13020: SGL_RS13020 - DUF433 domain-containing protein, at 2,394,232 to 2,394,552 _RS13020 SGL_RS13025: SGL_RS13025 - DUF5615 family PIN-like protein, at 2,394,536 to 2,394,871 _RS13025 SGL_RS13030: SGL_RS13030 - ferredoxin:protochlorophyllide reductase (ATP-dependent) subunit B, at 2,395,103 to 2,396,629 _RS13030 SGL_RS13035: SGL_RS13035 - TrkA family potassium uptake protein, at 2,396,761 to 2,397,441 _RS13035 SGL_RS13040: SGL_RS13040 - iron uptake porin, at 2,397,478 to 2,399,118 _RS13040 Position (kb) 2395 2396 2397Strain fitness (log2 ratio) -1 0 1at 2394.164 kb on - strandat 2394.393 kb on - strand, within SGL_RS13020at 2394.490 kb on - strand, within SGL_RS13020at 2394.881 kb on - strandat 2394.916 kb on + strandat 2395.383 kb on + strand, within SGL_RS13030at 2395.706 kb on + strand, within SGL_RS13030at 2395.756 kb on + strand, within SGL_RS13030at 2395.822 kb on - strand, within SGL_RS13030at 2395.894 kb on - strand, within SGL_RS13030at 2396.014 kb on + strand, within SGL_RS13030at 2396.031 kb on - strand, within SGL_RS13030at 2396.032 kb on - strand, within SGL_RS13030at 2396.097 kb on - strand, within SGL_RS13030at 2396.138 kb on + strand, within SGL_RS13030at 2396.156 kb on + strand, within SGL_RS13030at 2396.255 kb on + strand, within SGL_RS13030at 2396.324 kb on + strand, within SGL_RS13030at 2396.376 kb on + strand, within SGL_RS13030at 2396.376 kb on - strand, within SGL_RS13030at 2396.527 kb on + strandat 2396.632 kb on - strandat 2396.632 kb on - strandat 2396.713 kb on - strandat 2396.803 kb on - strandat 2396.857 kb on + strand, within SGL_RS13035at 2396.865 kb on - strand, within SGL_RS13035at 2397.092 kb on + strand, within SGL_RS13035at 2397.235 kb on + strand, within SGL_RS13035at 2397.309 kb on + strand, within SGL_RS13035at 2397.342 kb on + strand, within SGL_RS13035

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media
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2,394,164 - +0.1
2,394,393 - SGL_RS13020 0.50 -0.4
2,394,490 - SGL_RS13020 0.80 -0.4
2,394,881 - -0.3
2,394,916 + +0.0
2,395,383 + SGL_RS13030 0.18 +0.3
2,395,706 + SGL_RS13030 0.39 -1.1
2,395,756 + SGL_RS13030 0.43 +0.2
2,395,822 - SGL_RS13030 0.47 -0.7
2,395,894 - SGL_RS13030 0.52 +0.2
2,396,014 + SGL_RS13030 0.60 +0.8
2,396,031 - SGL_RS13030 0.61 -0.1
2,396,032 - SGL_RS13030 0.61 -0.6
2,396,097 - SGL_RS13030 0.65 -0.3
2,396,138 + SGL_RS13030 0.68 -0.2
2,396,156 + SGL_RS13030 0.69 -0.0
2,396,255 + SGL_RS13030 0.75 +0.7
2,396,324 + SGL_RS13030 0.80 -0.3
2,396,376 + SGL_RS13030 0.83 -0.3
2,396,376 - SGL_RS13030 0.83 -0.2
2,396,527 + -0.2
2,396,632 - -0.7
2,396,632 - +0.3
2,396,713 - -0.3
2,396,803 - +0.0
2,396,857 + SGL_RS13035 0.14 -0.0
2,396,865 - SGL_RS13035 0.15 +0.3
2,397,092 + SGL_RS13035 0.49 +0.2
2,397,235 + SGL_RS13035 0.70 -0.3
2,397,309 + SGL_RS13035 0.80 -0.0
2,397,342 + SGL_RS13035 0.85 +0.3

Or see this region's nucleotide sequence