Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11055

Experiment: growth in full media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11045 and SGL_RS11050 are separated by 26 nucleotidesSGL_RS11050 and SGL_RS11055 are separated by 83 nucleotidesSGL_RS11055 and SGL_RS11060 are separated by 42 nucleotides SGL_RS11045: SGL_RS11045 - glutathione peroxidase, at 1,938,985 to 1,939,494 _RS11045 SGL_RS11050: SGL_RS11050 - DUF3493 domain-containing protein, at 1,939,521 to 1,939,781 _RS11050 SGL_RS11055: SGL_RS11055 - hypothetical protein, at 1,939,865 to 1,940,506 _RS11055 SGL_RS11060: SGL_RS11060 - sodium:solute symporter, at 1,940,549 to 1,942,087 _RS11060 Position (kb) 1939 1940 1941Strain fitness (log2 ratio) -2 -1 0 1at 1939.124 kb on + strand, within SGL_RS11045at 1939.174 kb on - strand, within SGL_RS11045at 1939.558 kb on - strand, within SGL_RS11050at 1939.558 kb on - strand, within SGL_RS11050at 1939.931 kb on + strand, within SGL_RS11055at 1940.041 kb on + strand, within SGL_RS11055at 1940.080 kb on - strand, within SGL_RS11055at 1940.116 kb on - strand, within SGL_RS11055at 1940.246 kb on - strand, within SGL_RS11055at 1940.343 kb on + strand, within SGL_RS11055at 1940.602 kb on + strandat 1940.911 kb on - strand, within SGL_RS11060at 1940.969 kb on + strand, within SGL_RS11060at 1940.969 kb on + strand, within SGL_RS11060at 1940.977 kb on - strand, within SGL_RS11060at 1941.179 kb on - strand, within SGL_RS11060at 1941.194 kb on + strand, within SGL_RS11060at 1941.203 kb on - strand, within SGL_RS11060at 1941.213 kb on - strand, within SGL_RS11060

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media
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1,939,124 + SGL_RS11045 0.27 -0.2
1,939,174 - SGL_RS11045 0.37 -2.2
1,939,558 - SGL_RS11050 0.14 +0.1
1,939,558 - SGL_RS11050 0.14 -1.2
1,939,931 + SGL_RS11055 0.10 +0.0
1,940,041 + SGL_RS11055 0.27 +0.1
1,940,080 - SGL_RS11055 0.33 +0.1
1,940,116 - SGL_RS11055 0.39 -0.0
1,940,246 - SGL_RS11055 0.59 +0.9
1,940,343 + SGL_RS11055 0.74 +0.3
1,940,602 + -0.1
1,940,911 - SGL_RS11060 0.24 -0.0
1,940,969 + SGL_RS11060 0.27 +0.3
1,940,969 + SGL_RS11060 0.27 -0.4
1,940,977 - SGL_RS11060 0.28 +0.2
1,941,179 - SGL_RS11060 0.41 -0.0
1,941,194 + SGL_RS11060 0.42 -0.4
1,941,203 - SGL_RS11060 0.42 -0.0
1,941,213 - SGL_RS11060 0.43 -0.5

Or see this region's nucleotide sequence