Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06805

Experiment: growth in full media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06800 and SGL_RS06805 are separated by 396 nucleotidesSGL_RS06805 and SGL_RS06810 are separated by 142 nucleotides SGL_RS06800: SGL_RS06800 - glutathione synthase, at 1,051,159 to 1,052,121 _RS06800 SGL_RS06805: SGL_RS06805 - hypothetical protein, at 1,052,518 to 1,052,784 _RS06805 SGL_RS06810: SGL_RS06810 - 1,4-dihydroxy-2-naphthoyl-CoA synthase, at 1,052,927 to 1,053,754 _RS06810 Position (kb) 1052 1053Strain fitness (log2 ratio) -2 -1 0 1at 1051.542 kb on - strand, within SGL_RS06800at 1051.641 kb on + strand, within SGL_RS06800at 1051.737 kb on + strand, within SGL_RS06800at 1052.064 kb on + strandat 1052.699 kb on - strand, within SGL_RS06805at 1052.778 kb on + strandat 1052.778 kb on + strandat 1052.778 kb on + strandat 1052.786 kb on - strandat 1052.809 kb on + strandat 1052.925 kb on + strandat 1053.093 kb on - strand, within SGL_RS06810at 1053.492 kb on + strand, within SGL_RS06810

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Per-strain Table

Position Strand Gene LocusTag Fraction growth in full media
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1,051,542 - SGL_RS06800 0.40 -2.7
1,051,641 + SGL_RS06800 0.50 -2.5
1,051,737 + SGL_RS06800 0.60 -2.0
1,052,064 + -2.5
1,052,699 - SGL_RS06805 0.68 -0.6
1,052,778 + -0.5
1,052,778 + +0.9
1,052,778 + +0.3
1,052,786 - +0.0
1,052,809 + +0.3
1,052,925 + -0.0
1,053,093 - SGL_RS06810 0.20 -0.3
1,053,492 + SGL_RS06810 0.68 -1.6

Or see this region's nucleotide sequence