Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS16640

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,610,066	+				+0.3
3,610,066	+				+0.9
3,610,066	+				-1.5
3,610,066	+				-0.2
3,610,066	+				+1.4
3,610,067	-				+1.2
3,610,067	-				-0.2
3,610,067	-				-1.3
3,610,292	+				+0.0
3,610,292	+				+0.8
3,610,292	+				+0.4
3,610,293	-				+0.4
3,610,293	-				-0.6
3,610,293	-				+1.0
3,610,293	-				+0.8
3,610,293	-				+0.4
3,610,293	-				-1.6
3,610,533	+		LRK55_RS16635	0.34	+0.9
3,610,533	+		LRK55_RS16635	0.34	-1.2
3,610,533	+		LRK55_RS16635	0.34	+1.4
3,610,534	-		LRK55_RS16635	0.34	-0.1
3,610,534	-		LRK55_RS16635	0.34	-0.0
3,610,534	-		LRK55_RS16635	0.34	-1.6
3,610,534	-		LRK55_RS16635	0.34	+0.2
3,610,695	+		LRK55_RS16635	0.62	-1.0
3,610,788	+		LRK55_RS16635	0.78	+0.3
3,610,788	+		LRK55_RS16635	0.78	+0.5
3,610,788	+		LRK55_RS16635	0.78	+0.3
3,610,789	-		LRK55_RS16635	0.78	-0.0
3,610,789	-		LRK55_RS16635	0.78	-0.5
3,610,822	+		LRK55_RS16635	0.84	+1.3
3,610,822	+		LRK55_RS16635	0.84	+0.2
3,610,822	+		LRK55_RS16635	0.84	+0.1
3,610,822	+		LRK55_RS16635	0.84	-1.5
3,610,823	-		LRK55_RS16635	0.84	-1.3
3,610,823	-		LRK55_RS16635	0.84	+0.3
3,610,823	-		LRK55_RS16635	0.84	+0.5
3,610,823	-		LRK55_RS16635	0.84	-0.7
3,610,823	-		LRK55_RS16635	0.84	-0.3
3,611,132	+				-0.3
3,611,132	+				-0.5
3,611,132	+				-0.8
3,611,133	-				+2.4
3,611,133	-				-0.0
3,611,133	-				-0.7
3,611,133	-				+0.4
3,611,291	+		LRK55_RS16640	0.15	-1.3
3,611,291	+		LRK55_RS16640	0.15	-0.8
3,611,291	+		LRK55_RS16640	0.15	-0.5
3,611,291	+		LRK55_RS16640	0.15	-1.3
3,611,291	+		LRK55_RS16640	0.15	+2.0
3,611,291	+		LRK55_RS16640	0.15	-2.2
3,611,291	+		LRK55_RS16640	0.15	-0.5
3,611,291	+		LRK55_RS16640	0.15	-0.3
3,611,291	+		LRK55_RS16640	0.15	-1.2
3,611,291	+		LRK55_RS16640	0.15	+1.0
3,611,292	-		LRK55_RS16640	0.15	+0.3
3,611,292	-		LRK55_RS16640	0.15	-0.8
3,611,292	-		LRK55_RS16640	0.15	-2.6
3,611,292	-		LRK55_RS16640	0.15	-1.4
3,611,339	+		LRK55_RS16640	0.17	-0.2
3,611,339	+		LRK55_RS16640	0.17	+0.5
3,611,339	+		LRK55_RS16640	0.17	+0.2
3,611,339	+		LRK55_RS16640	0.17	-0.5
3,611,339	+		LRK55_RS16640	0.17	-1.5
3,611,339	+		LRK55_RS16640	0.17	-3.2
3,611,339	+		LRK55_RS16640	0.17	-0.1
3,611,339	+		LRK55_RS16640	0.17	-1.0
3,611,339	+		LRK55_RS16640	0.17	+0.1
3,611,339	+		LRK55_RS16640	0.17	-0.5
3,611,339	+		LRK55_RS16640	0.17	+0.0
3,611,339	+		LRK55_RS16640	0.17	+0.8
3,611,339	+		LRK55_RS16640	0.17	-1.5
3,611,339	+		LRK55_RS16640	0.17	+0.3
3,611,339	+		LRK55_RS16640	0.17	+1.4
3,611,339	+		LRK55_RS16640	0.17	-0.5
3,611,339	+		LRK55_RS16640	0.17	-1.3
3,611,339	+		LRK55_RS16640	0.17	+0.0
3,611,339	+		LRK55_RS16640	0.17	+1.3
3,611,339	+		LRK55_RS16640	0.17	-1.5
3,611,339	+		LRK55_RS16640	0.17	-0.9
3,611,340	-		LRK55_RS16640	0.17	+0.5
3,611,340	-		LRK55_RS16640	0.17	-0.9
3,611,340	-		LRK55_RS16640	0.17	-1.5
3,611,340	-		LRK55_RS16640	0.17	-0.0
3,611,340	-		LRK55_RS16640	0.17	+0.4
3,611,340	-		LRK55_RS16640	0.17	+0.0
3,611,340	-		LRK55_RS16640	0.17	-0.2
3,611,340	-		LRK55_RS16640	0.17	+1.0
3,611,340	-		LRK55_RS16640	0.17	-1.0
3,611,340	-		LRK55_RS16640	0.17	-0.3
3,611,340	-		LRK55_RS16640	0.17	-1.7
3,611,340	-		LRK55_RS16640	0.17	-0.3
3,611,340	-		LRK55_RS16640	0.17	-0.3
3,611,340	-		LRK55_RS16640	0.17	-1.2
3,611,340	-		LRK55_RS16640	0.17	-0.2
3,611,340	-		LRK55_RS16640	0.17	+0.3
3,611,340	-		LRK55_RS16640	0.17	-1.3
3,611,340	-		LRK55_RS16640	0.17	-0.4
3,611,340	-		LRK55_RS16640	0.17	+0.0
3,611,340	-		LRK55_RS16640	0.17	+0.7
3,611,464	+		LRK55_RS16640	0.23	-1.2
3,611,464	+		LRK55_RS16640	0.23	-0.2
3,611,464	+		LRK55_RS16640	0.23	-0.2
3,611,464	+		LRK55_RS16640	0.23	-0.3
3,611,465	-		LRK55_RS16640	0.23	+0.4
3,611,465	-		LRK55_RS16640	0.23	+1.0
3,611,465	-		LRK55_RS16640	0.23	-0.9
3,611,552	+		LRK55_RS16640	0.27	+2.0
3,611,552	+		LRK55_RS16640	0.27	+0.0
3,611,552	+		LRK55_RS16640	0.27	-2.6
3,611,552	+		LRK55_RS16640	0.27	-0.8
3,611,552	+		LRK55_RS16640	0.27	-0.9
3,611,553	-		LRK55_RS16640	0.27	+1.0
3,611,553	-		LRK55_RS16640	0.27	-1.6
3,611,553	-		LRK55_RS16640	0.27	-1.6
3,611,553	-		LRK55_RS16640	0.27	+1.1
3,611,553	-		LRK55_RS16640	0.27	+0.6
3,611,554	+		LRK55_RS16640	0.27	+0.0
3,611,554	+		LRK55_RS16640	0.27	-0.9
3,611,555	-		LRK55_RS16640	0.27	-1.6
3,611,576	+		LRK55_RS16640	0.28	+0.4
3,611,577	-		LRK55_RS16640	0.28	+1.0
3,611,577	-		LRK55_RS16640	0.28	-0.3
3,611,577	-		LRK55_RS16640	0.28	-0.2
3,611,577	-		LRK55_RS16640	0.28	+0.2
3,611,861	+		LRK55_RS16640	0.42	-0.1
3,611,861	+		LRK55_RS16640	0.42	-0.4
3,611,861	+		LRK55_RS16640	0.42	-1.2
3,611,861	+		LRK55_RS16640	0.42	+0.0
3,611,861	+		LRK55_RS16640	0.42	-1.0
3,611,862	-		LRK55_RS16640	0.42	-1.8
3,611,862	-		LRK55_RS16640	0.42	+0.5
3,611,862	-		LRK55_RS16640	0.42	-1.1
3,611,862	-		LRK55_RS16640	0.42	+0.2
3,611,891	+		LRK55_RS16640	0.44	+0.5
3,611,892	-		LRK55_RS16640	0.44	-1.6
3,611,892	-		LRK55_RS16640	0.44	-0.8
3,612,002	+		LRK55_RS16640	0.49	+0.3
3,612,003	-		LRK55_RS16640	0.49	+1.3
3,612,003	-		LRK55_RS16640	0.49	-0.7
3,612,003	-		LRK55_RS16640	0.49	+0.4
3,612,298	+		LRK55_RS16640	0.63	-0.2
3,612,298	+		LRK55_RS16640	0.63	-1.6
3,612,298	+		LRK55_RS16640	0.63	-0.7
3,612,298	+		LRK55_RS16640	0.63	+0.0
3,612,298	+		LRK55_RS16640	0.63	+0.3
3,612,298	+		LRK55_RS16640	0.63	-1.0
3,612,298	+		LRK55_RS16640	0.63	+1.0
3,612,298	+		LRK55_RS16640	0.63	-1.8
3,612,298	+		LRK55_RS16640	0.63	-1.4
3,612,298	+		LRK55_RS16640	0.63	-0.5
3,612,299	-		LRK55_RS16640	0.63	-0.7
3,612,299	-		LRK55_RS16640	0.63	-1.6
3,612,299	-		LRK55_RS16640	0.63	+0.3
3,612,299	-		LRK55_RS16640	0.63	-0.4
3,612,299	-		LRK55_RS16640	0.63	-0.4
3,612,299	-		LRK55_RS16640	0.63	+1.5
3,612,299	-		LRK55_RS16640	0.63	-0.2
3,612,299	-		LRK55_RS16640	0.63	+1.7
3,612,299	-		LRK55_RS16640	0.63	-0.9
3,612,299	-		LRK55_RS16640	0.63	+0.1
3,612,299	-		LRK55_RS16640	0.63	+0.8
3,612,299	-		LRK55_RS16640	0.63	+1.0
3,612,299	-		LRK55_RS16640	0.63	+0.7
3,612,299	-		LRK55_RS16640	0.63	-1.1
3,612,326	+		LRK55_RS16640	0.64	-1.0
3,612,326	+		LRK55_RS16640	0.64	-0.7
3,612,326	+		LRK55_RS16640	0.64	-0.8
3,612,327	-		LRK55_RS16640	0.65	-0.0
3,612,779	+		LRK55_RS16640	0.86	-0.3
3,612,779	+		LRK55_RS16640	0.86	+0.5
3,612,779	+		LRK55_RS16640	0.86	-1.7
3,612,780	-		LRK55_RS16640	0.86	+1.0
3,612,780	-		LRK55_RS16640	0.86	-1.6
3,612,780	-		LRK55_RS16640	0.86	+1.6
3,613,071	+				+0.0
3,613,071	+				-0.7
3,613,071	+				+0.8
3,613,072	-				+1.0
3,613,072	-				-0.2
3,613,072	-				-1.0
3,613,072	-				+0.1
3,613,072	-				-0.6
3,613,072	-				+0.3
3,613,072	-				+0.7
3,613,072	-				+0.3
3,613,072	-				+0.2
3,613,072	-				+0.3
3,613,072	-				-1.0
3,613,072	-				-0.1
3,613,100	+				+0.9
3,613,100	+				+0.2
3,613,100	+				-1.8
3,613,100	+				-0.4
3,613,100	+				+1.3
3,613,100	+				-0.2
3,613,151	-				-0.7
3,613,351	+				+0.5
3,613,352	-				-0.8
3,613,390	+				+0.4
3,613,390	+				-3.0
3,613,390	+				-0.4
3,613,390	+				+2.7
3,613,390	+				-1.6
3,613,391	-				-0.5
3,613,391	-				-0.6
3,613,436	+		LRK55_RS16645	0.11	+0.9
3,613,436	+		LRK55_RS16645	0.11	-1.0
3,613,436	+		LRK55_RS16645	0.11	+0.7
3,613,437	-		LRK55_RS16645	0.12	+0.3
3,613,437	-		LRK55_RS16645	0.12	-1.6
3,613,437	-		LRK55_RS16645	0.12	-1.9
3,613,437	-		LRK55_RS16645	0.12	-1.0
3,613,539	+		LRK55_RS16645	0.32	-1.3
3,613,539	+		LRK55_RS16645	0.32	-1.8
3,613,539	+		LRK55_RS16645	0.32	+0.0
3,613,539	+		LRK55_RS16645	0.32	-3.3
3,613,539	+		LRK55_RS16645	0.32	-3.0
3,613,539	+		LRK55_RS16645	0.32	-1.6
3,613,539	+		LRK55_RS16645	0.32	-0.6
3,613,539	+		LRK55_RS16645	0.32	-1.7
3,613,539	+		LRK55_RS16645	0.32	-2.9
3,613,539	+		LRK55_RS16645	0.32	+0.2
3,613,539	+		LRK55_RS16645	0.32	-1.0
3,613,539	+		LRK55_RS16645	0.32	-0.2
3,613,540	-		LRK55_RS16645	0.32	-3.5
3,613,540	-		LRK55_RS16645	0.32	-1.5
3,613,540	-		LRK55_RS16645	0.32	-0.2
3,613,540	-		LRK55_RS16645	0.32	+0.5
3,613,540	-		LRK55_RS16645	0.32	-1.5
3,613,540	-		LRK55_RS16645	0.32	-2.2
3,613,540	-		LRK55_RS16645	0.32	-3.6
3,613,540	-		LRK55_RS16645	0.32	-1.0
3,613,540	-		LRK55_RS16645	0.32	-2.3
3,613,540	-		LRK55_RS16645	0.32	-1.2
3,613,629	+		LRK55_RS16645	0.50	-1.4
3,613,629	+		LRK55_RS16645	0.50	+2.0
3,613,629	+		LRK55_RS16645	0.50	+0.0
3,613,629	+		LRK55_RS16645	0.50	-0.9
3,613,629	+		LRK55_RS16645	0.50	-2.8
3,613,629	+		LRK55_RS16645	0.50	-2.0
3,613,629	+		LRK55_RS16645	0.50	-1.0
3,613,630	-		LRK55_RS16645	0.51	+0.2
3,613,630	-		LRK55_RS16645	0.51	-2.0
3,613,630	-		LRK55_RS16645	0.51	+1.0
3,613,630	-		LRK55_RS16645	0.51	-1.8
3,613,630	-		LRK55_RS16645	0.51	-0.6
3,613,630	-		LRK55_RS16645	0.51	-2.5
3,613,630	-		LRK55_RS16645	0.51	-1.3
3,613,630	-		LRK55_RS16645	0.51	-3.1
3,613,630	-		LRK55_RS16645	0.51	-0.7
3,613,630	-		LRK55_RS16645	0.51	-0.7
3,613,659	+		LRK55_RS16645	0.56	-2.3
3,613,659	+		LRK55_RS16645	0.56	-2.0
3,613,659	+		LRK55_RS16645	0.56	-0.1
3,613,659	+		LRK55_RS16645	0.56	-2.9
3,613,660	-		LRK55_RS16645	0.57	-1.9
3,613,660	-		LRK55_RS16645	0.57	-0.7
3,613,660	-		LRK55_RS16645	0.57	-0.6
3,613,967	-				-3.5
3,613,994	+				-2.2
3,613,994	+				-1.5
3,613,994	+				-1.2
3,613,994	+				-2.0
3,613,995	-				-1.6
3,613,995	-				-0.8
3,613,995	-				-1.6
3,613,995	-				-2.3
3,613,995	-				-1.0
3,613,995	-				-0.8
3,613,995	-				-0.5