Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS00375 and LRK55_RS00380 are separated by 64 nucleotides LRK55_RS00380 and LRK55_RS00385 are separated by 10 nucleotides LRK55_RS00385 and LRK55_RS00390 overlap by 1 nucleotides
LRK55_RS00375: LRK55_RS00375 - adenylosuccinate synthase, at 73,223 to 74,515
_RS00375
LRK55_RS00380: LRK55_RS00380 - DUF2065 domain-containing protein, at 74,580 to 74,762
_RS00380
LRK55_RS00385: LRK55_RS00385 - protease modulator HflC, at 74,773 to 75,639
_RS00385
LRK55_RS00390: LRK55_RS00390 - FtsH protease activity modulator HflK, at 75,639 to 76,709
_RS00390
Position (kb) 74
75 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 74.524 kb on - strand at 74.579 kb on - strand at 74.579 kb on - strand at 74.579 kb on - strand at 74.676 kb on + strand, within LRK55_RS00380 at 74.676 kb on + strand, within LRK55_RS00380 at 74.676 kb on + strand, within LRK55_RS00380 at 74.677 kb on - strand, within LRK55_RS00380 at 74.801 kb on + strand at 74.802 kb on - strand at 74.862 kb on + strand, within LRK55_RS00385 at 74.862 kb on + strand, within LRK55_RS00385 at 74.862 kb on + strand, within LRK55_RS00385 at 74.863 kb on - strand, within LRK55_RS00385 at 74.863 kb on - strand, within LRK55_RS00385 at 74.863 kb on - strand, within LRK55_RS00385 at 74.863 kb on - strand, within LRK55_RS00385 at 74.885 kb on + strand, within LRK55_RS00385 at 74.886 kb on - strand, within LRK55_RS00385 at 74.916 kb on - strand, within LRK55_RS00385 at 74.916 kb on - strand, within LRK55_RS00385 at 74.916 kb on - strand, within LRK55_RS00385 at 74.916 kb on - strand, within LRK55_RS00385 at 74.916 kb on - strand, within LRK55_RS00385 at 74.927 kb on + strand, within LRK55_RS00385 at 74.928 kb on - strand, within LRK55_RS00385 at 74.928 kb on - strand, within LRK55_RS00385 at 75.104 kb on + strand, within LRK55_RS00385 at 75.104 kb on + strand, within LRK55_RS00385 at 75.105 kb on - strand, within LRK55_RS00385 at 75.105 kb on - strand, within LRK55_RS00385 at 75.105 kb on - strand, within LRK55_RS00385 at 75.351 kb on - strand, within LRK55_RS00385 at 75.351 kb on - strand, within LRK55_RS00385 at 75.351 kb on - strand, within LRK55_RS00385 at 75.384 kb on - strand, within LRK55_RS00385 at 75.384 kb on - strand, within LRK55_RS00385 at 75.384 kb on - strand, within LRK55_RS00385 at 75.422 kb on + strand, within LRK55_RS00385 at 75.422 kb on + strand, within LRK55_RS00385 at 75.423 kb on - strand, within LRK55_RS00385
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 74,524 - -2.3 74,579 - -1.3 74,579 - -1.0 74,579 - +1.0 74,676 + LRK55_RS00380 0.52 +1.4 74,676 + LRK55_RS00380 0.52 -0.4 74,676 + LRK55_RS00380 0.52 -2.0 74,677 - LRK55_RS00380 0.53 -0.0 74,801 + -0.6 74,802 - -1.6 74,862 + LRK55_RS00385 0.10 -1.6 74,862 + LRK55_RS00385 0.10 -1.3 74,862 + LRK55_RS00385 0.10 -2.2 74,863 - LRK55_RS00385 0.10 -0.6 74,863 - LRK55_RS00385 0.10 -1.6 74,863 - LRK55_RS00385 0.10 -1.0 74,863 - LRK55_RS00385 0.10 -2.9 74,885 + LRK55_RS00385 0.13 -1.6 74,886 - LRK55_RS00385 0.13 -1.3 74,916 - LRK55_RS00385 0.16 -0.6 74,916 - LRK55_RS00385 0.16 -1.8 74,916 - LRK55_RS00385 0.16 -1.3 74,916 - LRK55_RS00385 0.16 -1.0 74,916 - LRK55_RS00385 0.16 -1.3 74,927 + LRK55_RS00385 0.18 -0.6 74,928 - LRK55_RS00385 0.18 -0.0 74,928 - LRK55_RS00385 0.18 -1.0 75,104 + LRK55_RS00385 0.38 +1.0 75,104 + LRK55_RS00385 0.38 -2.5 75,105 - LRK55_RS00385 0.38 -1.6 75,105 - LRK55_RS00385 0.38 -1.8 75,105 - LRK55_RS00385 0.38 -3.1 75,351 - LRK55_RS00385 0.67 -2.0 75,351 - LRK55_RS00385 0.67 -1.0 75,351 - LRK55_RS00385 0.67 -1.0 75,384 - LRK55_RS00385 0.70 -1.3 75,384 - LRK55_RS00385 0.70 -1.6 75,384 - LRK55_RS00385 0.70 -0.6 75,422 + LRK55_RS00385 0.75 -1.8 75,422 + LRK55_RS00385 0.75 -1.0 75,423 - LRK55_RS00385 0.75 -0.6
Or see this region's nucleotide sequence