Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS18535 and LRK55_RS18540 are separated by 254 nucleotides LRK55_RS18540 and LRK55_RS18545 are separated by 62 nucleotides
LRK55_RS18535: LRK55_RS18535 - hypothetical protein, at 39,724 to 41,355
_RS18535
LRK55_RS18540: LRK55_RS18540 - hypothetical protein, at 41,610 to 42,470
_RS18540
LRK55_RS18545: LRK55_RS18545 - AAA family ATPase, at 42,533 to 43,639
_RS18545
Position (kb) 41
42
43 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 40.822 kb on + strand, within LRK55_RS18535 at 40.823 kb on - strand, within LRK55_RS18535 at 40.843 kb on + strand, within LRK55_RS18535 at 40.843 kb on + strand, within LRK55_RS18535 at 40.844 kb on - strand, within LRK55_RS18535 at 40.957 kb on + strand, within LRK55_RS18535 at 40.957 kb on + strand, within LRK55_RS18535 at 41.128 kb on + strand, within LRK55_RS18535 at 41.129 kb on - strand, within LRK55_RS18535 at 41.129 kb on - strand, within LRK55_RS18535 at 41.266 kb on - strand at 41.394 kb on + strand at 41.394 kb on + strand at 41.394 kb on + strand at 41.394 kb on + strand at 41.394 kb on + strand at 41.394 kb on + strand at 41.394 kb on + strand at 41.394 kb on + strand at 41.395 kb on - strand at 41.395 kb on - strand at 41.401 kb on - strand at 41.441 kb on - strand at 41.441 kb on - strand at 41.490 kb on + strand at 41.490 kb on + strand at 41.490 kb on + strand at 41.490 kb on + strand at 41.490 kb on + strand at 41.490 kb on + strand at 41.490 kb on + strand at 41.490 kb on + strand at 41.491 kb on - strand at 41.491 kb on - strand at 41.491 kb on - strand at 41.491 kb on - strand at 41.491 kb on - strand at 41.493 kb on - strand at 41.505 kb on + strand at 41.505 kb on + strand at 41.505 kb on + strand at 41.506 kb on - strand at 41.506 kb on - strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.536 kb on + strand at 41.537 kb on - strand at 41.537 kb on - strand at 41.537 kb on - strand at 41.537 kb on - strand at 41.537 kb on - strand at 41.537 kb on - strand at 41.537 kb on - strand at 41.537 kb on - strand at 41.537 kb on - strand at 41.537 kb on - strand at 41.681 kb on + strand at 41.681 kb on + strand at 41.681 kb on + strand at 41.682 kb on - strand at 41.923 kb on - strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.942 kb on + strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.943 kb on - strand, within LRK55_RS18540 at 41.946 kb on + strand, within LRK55_RS18540 at 41.946 kb on + strand, within LRK55_RS18540 at 41.946 kb on + strand, within LRK55_RS18540 at 41.946 kb on + strand, within LRK55_RS18540 at 41.947 kb on - strand, within LRK55_RS18540 at 41.947 kb on - strand, within LRK55_RS18540 at 41.947 kb on - strand, within LRK55_RS18540 at 41.947 kb on - strand, within LRK55_RS18540 at 41.947 kb on - strand, within LRK55_RS18540 at 41.947 kb on - strand, within LRK55_RS18540 at 41.947 kb on - strand, within LRK55_RS18540 at 41.947 kb on - strand, within LRK55_RS18540 at 42.201 kb on + strand, within LRK55_RS18540 at 42.202 kb on - strand, within LRK55_RS18540 at 42.202 kb on - strand, within LRK55_RS18540 at 42.447 kb on + strand at 42.448 kb on - strand at 42.448 kb on - strand at 42.536 kb on + strand at 42.536 kb on + strand at 42.536 kb on + strand at 42.536 kb on + strand at 42.537 kb on - strand at 42.537 kb on - strand at 42.537 kb on - strand at 42.537 kb on - strand at 42.537 kb on - strand at 42.537 kb on - strand at 42.537 kb on - strand at 42.537 kb on - strand at 42.537 kb on - strand at 42.537 kb on - strand at 42.611 kb on + strand at 42.611 kb on + strand at 42.641 kb on + strand at 42.641 kb on + strand at 42.687 kb on - strand, within LRK55_RS18545 at 42.687 kb on - strand, within LRK55_RS18545 at 42.705 kb on - strand, within LRK55_RS18545 at 42.705 kb on - strand, within LRK55_RS18545 at 42.705 kb on - strand, within LRK55_RS18545 at 42.793 kb on + strand, within LRK55_RS18545 at 42.793 kb on + strand, within LRK55_RS18545 at 42.794 kb on - strand, within LRK55_RS18545 at 42.794 kb on - strand, within LRK55_RS18545 at 42.887 kb on + strand, within LRK55_RS18545 at 42.887 kb on + strand, within LRK55_RS18545 at 42.888 kb on - strand, within LRK55_RS18545 at 42.888 kb on - strand, within LRK55_RS18545 at 42.971 kb on + strand, within LRK55_RS18545 at 43.044 kb on - strand, within LRK55_RS18545 at 43.223 kb on + strand, within LRK55_RS18545 at 43.362 kb on - strand, within LRK55_RS18545
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 40,822 + LRK55_RS18535 0.67 -0.6 40,823 - LRK55_RS18535 0.67 -0.0 40,843 + LRK55_RS18535 0.69 -0.0 40,843 + LRK55_RS18535 0.69 +0.5 40,844 - LRK55_RS18535 0.69 -0.2 40,957 + LRK55_RS18535 0.76 -1.0 40,957 + LRK55_RS18535 0.76 -0.6 41,128 + LRK55_RS18535 0.86 +0.3 41,129 - LRK55_RS18535 0.86 +0.1 41,129 - LRK55_RS18535 0.86 -0.5 41,266 - +0.4 41,394 + -1.2 41,394 + -0.4 41,394 + +0.6 41,394 + +1.3 41,394 + -0.2 41,394 + -0.5 41,394 + -1.0 41,394 + -1.4 41,395 - +0.6 41,395 - +0.7 41,401 - +0.4 41,441 - -0.8 41,441 - +0.5 41,490 + +0.2 41,490 + +0.7 41,490 + +0.7 41,490 + +1.0 41,490 + +1.1 41,490 + +0.1 41,490 + +0.2 41,490 + +0.6 41,491 - -0.1 41,491 - -1.9 41,491 - -0.2 41,491 - -2.2 41,491 - +0.2 41,493 - +0.5 41,505 + +1.4 41,505 + +0.2 41,505 + +1.0 41,506 - +0.3 41,506 - +0.5 41,536 + +1.0 41,536 + +0.4 41,536 + -0.6 41,536 + +0.8 41,536 + -0.9 41,536 + -0.0 41,536 + -0.0 41,536 + -1.0 41,536 + -0.1 41,536 + +0.2 41,536 + -0.2 41,536 + +0.6 41,536 + +0.6 41,536 + +3.3 41,536 + -0.1 41,536 + +0.7 41,536 + +0.1 41,536 + +0.4 41,536 + -0.5 41,536 + +1.0 41,536 + +0.0 41,537 - +1.4 41,537 - +0.5 41,537 - -0.1 41,537 - -0.1 41,537 - -0.3 41,537 - -0.4 41,537 - -1.0 41,537 - -0.5 41,537 - -0.4 41,537 - +0.0 41,681 + +0.7 41,681 + +0.1 41,681 + +0.4 41,682 - +1.2 41,923 - LRK55_RS18540 0.36 -1.0 41,942 + LRK55_RS18540 0.39 -1.0 41,942 + LRK55_RS18540 0.39 +1.5 41,942 + LRK55_RS18540 0.39 +0.4 41,942 + LRK55_RS18540 0.39 +0.4 41,942 + LRK55_RS18540 0.39 -0.4 41,942 + LRK55_RS18540 0.39 +1.2 41,942 + LRK55_RS18540 0.39 +0.3 41,942 + LRK55_RS18540 0.39 +0.3 41,942 + LRK55_RS18540 0.39 +0.1 41,942 + LRK55_RS18540 0.39 -0.0 41,942 + LRK55_RS18540 0.39 +1.8 41,942 + LRK55_RS18540 0.39 +0.5 41,942 + LRK55_RS18540 0.39 -0.2 41,943 - LRK55_RS18540 0.39 +0.2 41,943 - LRK55_RS18540 0.39 +0.1 41,943 - LRK55_RS18540 0.39 +0.2 41,943 - LRK55_RS18540 0.39 +0.4 41,943 - LRK55_RS18540 0.39 -1.2 41,943 - LRK55_RS18540 0.39 +0.2 41,943 - LRK55_RS18540 0.39 +0.6 41,943 - LRK55_RS18540 0.39 -0.2 41,943 - LRK55_RS18540 0.39 -0.2 41,943 - LRK55_RS18540 0.39 +0.2 41,943 - LRK55_RS18540 0.39 +0.4 41,943 - LRK55_RS18540 0.39 +0.4 41,943 - LRK55_RS18540 0.39 -0.2 41,943 - LRK55_RS18540 0.39 +0.9 41,943 - LRK55_RS18540 0.39 -0.6 41,943 - LRK55_RS18540 0.39 -0.1 41,943 - LRK55_RS18540 0.39 -1.0 41,946 + LRK55_RS18540 0.39 +0.1 41,946 + LRK55_RS18540 0.39 -0.6 41,946 + LRK55_RS18540 0.39 +0.6 41,946 + LRK55_RS18540 0.39 -1.7 41,947 - LRK55_RS18540 0.39 -0.4 41,947 - LRK55_RS18540 0.39 -1.9 41,947 - LRK55_RS18540 0.39 +0.1 41,947 - LRK55_RS18540 0.39 +0.5 41,947 - LRK55_RS18540 0.39 +0.8 41,947 - LRK55_RS18540 0.39 +0.0 41,947 - LRK55_RS18540 0.39 +1.3 41,947 - LRK55_RS18540 0.39 -0.0 42,201 + LRK55_RS18540 0.69 +0.3 42,202 - LRK55_RS18540 0.69 -0.6 42,202 - LRK55_RS18540 0.69 -0.3 42,447 + -1.0 42,448 - -0.3 42,448 - -1.3 42,536 + +0.4 42,536 + +0.2 42,536 + -0.7 42,536 + -0.4 42,537 - +0.5 42,537 - -2.0 42,537 - -0.2 42,537 - +0.2 42,537 - -0.4 42,537 - +0.3 42,537 - +1.0 42,537 - -0.0 42,537 - +0.1 42,537 - +0.3 42,611 + +1.2 42,611 + +0.5 42,641 + +0.8 42,641 + -0.1 42,687 - LRK55_RS18545 0.14 -1.0 42,687 - LRK55_RS18545 0.14 +0.5 42,705 - LRK55_RS18545 0.16 -0.8 42,705 - LRK55_RS18545 0.16 +0.6 42,705 - LRK55_RS18545 0.16 -1.9 42,793 + LRK55_RS18545 0.23 -0.4 42,793 + LRK55_RS18545 0.23 -1.5 42,794 - LRK55_RS18545 0.24 +0.8 42,794 - LRK55_RS18545 0.24 +1.0 42,887 + LRK55_RS18545 0.32 -1.5 42,887 + LRK55_RS18545 0.32 -0.3 42,888 - LRK55_RS18545 0.32 -0.2 42,888 - LRK55_RS18545 0.32 -0.5 42,971 + LRK55_RS18545 0.40 +0.4 43,044 - LRK55_RS18545 0.46 +0.3 43,223 + LRK55_RS18545 0.62 +0.0 43,362 - LRK55_RS18545 0.75 -0.0
Or see this region's nucleotide sequence