Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS16895

Experiment: no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK55_RS16890 and LRK55_RS16895 are separated by 11 nucleotidesLRK55_RS16895 and LRK55_RS16900 are separated by 182 nucleotidesLRK55_RS16900 and LRK55_RS16905 are separated by 45 nucleotides LRK55_RS16890: LRK55_RS16890 - copper resistance protein B, at 3,658,799 to 3,660,082 _RS16890 LRK55_RS16895: LRK55_RS16895 - c-type cytochrome, at 3,660,094 to 3,661,203 _RS16895 LRK55_RS16900: LRK55_RS16900 - DUF411 domain-containing protein, at 3,661,386 to 3,661,757 _RS16900 LRK55_RS16905: LRK55_RS16905 - heavy metal translocating P-type ATPase, at 3,661,803 to 3,664,151 _RS16905 Position (kb) 3660 3661 3662Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3659.768 kb on + strand, within LRK55_RS16890at 3659.769 kb on - strand, within LRK55_RS16890at 3659.788 kb on + strand, within LRK55_RS16890at 3659.788 kb on + strand, within LRK55_RS16890at 3659.903 kb on - strand, within LRK55_RS16890at 3659.942 kb on + strand, within LRK55_RS16890at 3659.970 kb on - strandat 3660.080 kb on + strandat 3660.187 kb on + strandat 3660.188 kb on - strandat 3660.188 kb on - strandat 3660.342 kb on + strand, within LRK55_RS16895at 3660.342 kb on + strand, within LRK55_RS16895at 3660.342 kb on + strand, within LRK55_RS16895at 3660.342 kb on + strand, within LRK55_RS16895at 3660.342 kb on + strand, within LRK55_RS16895at 3660.343 kb on - strand, within LRK55_RS16895at 3660.343 kb on - strand, within LRK55_RS16895at 3660.348 kb on + strand, within LRK55_RS16895at 3660.403 kb on + strand, within LRK55_RS16895at 3660.403 kb on + strand, within LRK55_RS16895at 3660.580 kb on + strand, within LRK55_RS16895at 3660.580 kb on + strand, within LRK55_RS16895at 3660.580 kb on + strand, within LRK55_RS16895at 3660.581 kb on - strand, within LRK55_RS16895at 3660.581 kb on - strand, within LRK55_RS16895at 3660.940 kb on - strand, within LRK55_RS16895at 3660.940 kb on - strand, within LRK55_RS16895at 3661.299 kb on + strandat 3661.299 kb on + strandat 3661.406 kb on + strandat 3661.406 kb on + strandat 3661.439 kb on + strand, within LRK55_RS16900at 3661.439 kb on + strand, within LRK55_RS16900at 3661.439 kb on + strand, within LRK55_RS16900at 3661.440 kb on - strand, within LRK55_RS16900at 3661.440 kb on - strand, within LRK55_RS16900at 3661.557 kb on + strand, within LRK55_RS16900at 3661.695 kb on + strand, within LRK55_RS16900at 3661.945 kb on + strandat 3662.004 kb on + strandat 3662.004 kb on + strandat 3662.004 kb on + strandat 3662.005 kb on - strandat 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.058 kb on + strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905at 3662.059 kb on - strand, within LRK55_RS16905

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Per-strain Table

Position Strand Gene LocusTag Fraction no stress control
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3,659,768 + LRK55_RS16890 0.75 -1.0
3,659,769 - LRK55_RS16890 0.76 -1.0
3,659,788 + LRK55_RS16890 0.77 -1.6
3,659,788 + LRK55_RS16890 0.77 -0.6
3,659,903 - LRK55_RS16890 0.86 -1.8
3,659,942 + LRK55_RS16890 0.89 +0.4
3,659,970 - -1.6
3,660,080 + +0.0
3,660,187 + +0.0
3,660,188 - +0.0
3,660,188 - +1.6
3,660,342 + LRK55_RS16895 0.22 +1.5
3,660,342 + LRK55_RS16895 0.22 -0.2
3,660,342 + LRK55_RS16895 0.22 +0.9
3,660,342 + LRK55_RS16895 0.22 -0.3
3,660,342 + LRK55_RS16895 0.22 +0.9
3,660,343 - LRK55_RS16895 0.22 +0.4
3,660,343 - LRK55_RS16895 0.22 -0.1
3,660,348 + LRK55_RS16895 0.23 +0.6
3,660,403 + LRK55_RS16895 0.28 -1.8
3,660,403 + LRK55_RS16895 0.28 -0.6
3,660,580 + LRK55_RS16895 0.44 -0.6
3,660,580 + LRK55_RS16895 0.44 +0.0
3,660,580 + LRK55_RS16895 0.44 +0.2
3,660,581 - LRK55_RS16895 0.44 +1.0
3,660,581 - LRK55_RS16895 0.44 -2.0
3,660,940 - LRK55_RS16895 0.76 -0.0
3,660,940 - LRK55_RS16895 0.76 -1.6
3,661,299 + -3.2
3,661,299 + +0.1
3,661,406 + +0.2
3,661,406 + -0.3
3,661,439 + LRK55_RS16900 0.14 +0.9
3,661,439 + LRK55_RS16900 0.14 -0.6
3,661,439 + LRK55_RS16900 0.14 -0.7
3,661,440 - LRK55_RS16900 0.15 +0.8
3,661,440 - LRK55_RS16900 0.15 -1.1
3,661,557 + LRK55_RS16900 0.46 +1.5
3,661,695 + LRK55_RS16900 0.83 +0.1
3,661,945 + +1.4
3,662,004 + +0.8
3,662,004 + +0.7
3,662,004 + -1.0
3,662,005 - +1.1
3,662,058 + LRK55_RS16905 0.11 +1.4
3,662,058 + LRK55_RS16905 0.11 +0.6
3,662,058 + LRK55_RS16905 0.11 +0.5
3,662,058 + LRK55_RS16905 0.11 -0.2
3,662,058 + LRK55_RS16905 0.11 +0.0
3,662,058 + LRK55_RS16905 0.11 -0.7
3,662,058 + LRK55_RS16905 0.11 +1.0
3,662,058 + LRK55_RS16905 0.11 +0.8
3,662,058 + LRK55_RS16905 0.11 -2.4
3,662,058 + LRK55_RS16905 0.11 +0.1
3,662,058 + LRK55_RS16905 0.11 +1.0
3,662,058 + LRK55_RS16905 0.11 -1.2
3,662,058 + LRK55_RS16905 0.11 -0.7
3,662,058 + LRK55_RS16905 0.11 -2.2
3,662,058 + LRK55_RS16905 0.11 +0.1
3,662,058 + LRK55_RS16905 0.11 +0.4
3,662,058 + LRK55_RS16905 0.11 +0.1
3,662,058 + LRK55_RS16905 0.11 -2.3
3,662,058 + LRK55_RS16905 0.11 +0.7
3,662,058 + LRK55_RS16905 0.11 +1.0
3,662,058 + LRK55_RS16905 0.11 +0.2
3,662,059 - LRK55_RS16905 0.11 +0.8
3,662,059 - LRK55_RS16905 0.11 -0.4
3,662,059 - LRK55_RS16905 0.11 -0.3
3,662,059 - LRK55_RS16905 0.11 +0.4
3,662,059 - LRK55_RS16905 0.11 -1.1
3,662,059 - LRK55_RS16905 0.11 +0.8
3,662,059 - LRK55_RS16905 0.11 +0.2
3,662,059 - LRK55_RS16905 0.11 +0.2
3,662,059 - LRK55_RS16905 0.11 +0.2
3,662,059 - LRK55_RS16905 0.11 +0.2
3,662,059 - LRK55_RS16905 0.11 +0.0
3,662,059 - LRK55_RS16905 0.11 -2.2
3,662,059 - LRK55_RS16905 0.11 -1.6
3,662,059 - LRK55_RS16905 0.11 +3.0
3,662,059 - LRK55_RS16905 0.11 +0.3
3,662,059 - LRK55_RS16905 0.11 -0.0
3,662,059 - LRK55_RS16905 0.11 -0.5
3,662,059 - LRK55_RS16905 0.11 +0.0

Or see this region's nucleotide sequence