Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS16490

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
3,585,916	+		LRK55_RS16485	0.29	+0.6
3,585,932	+		LRK55_RS16485	0.31	-0.8
3,585,933	-		LRK55_RS16485	0.31	+0.5
3,586,243	+		LRK55_RS16485	0.62	-0.2
3,586,243	+		LRK55_RS16485	0.62	+0.1
3,586,243	+		LRK55_RS16485	0.62	+0.6
3,586,243	+		LRK55_RS16485	0.62	+0.9
3,586,243	+		LRK55_RS16485	0.62	-0.6
3,586,243	+		LRK55_RS16485	0.62	+0.4
3,586,243	+		LRK55_RS16485	0.62	+1.6
3,586,243	+		LRK55_RS16485	0.62	-1.3
3,586,244	-		LRK55_RS16485	0.62	+0.7
3,586,244	-		LRK55_RS16485	0.62	+0.8
3,586,244	-		LRK55_RS16485	0.62	-0.0
3,586,244	-		LRK55_RS16485	0.62	+1.2
3,586,249	+		LRK55_RS16485	0.62	+0.9
3,586,249	+		LRK55_RS16485	0.62	+0.3
3,586,250	-		LRK55_RS16485	0.63	+0.0
3,586,250	-		LRK55_RS16485	0.63	+0.7
3,586,250	-		LRK55_RS16485	0.63	-0.4
3,586,250	-		LRK55_RS16485	0.63	-1.7
3,586,285	+		LRK55_RS16485	0.66	+2.1
3,586,285	+		LRK55_RS16485	0.66	+1.1
3,586,286	-		LRK55_RS16485	0.66	+0.5
3,586,326	+		LRK55_RS16485	0.70	+0.5
3,586,326	+		LRK55_RS16485	0.70	-0.2
3,586,327	-		LRK55_RS16485	0.70	+0.1
3,586,327	-		LRK55_RS16485	0.70	+0.6
3,586,345	+		LRK55_RS16485	0.72	-0.4
3,586,346	-		LRK55_RS16485	0.72	-0.8
3,586,346	-		LRK55_RS16485	0.72	-0.8
3,586,346	-		LRK55_RS16485	0.72	-0.1
3,586,490	-		LRK55_RS16485	0.87	+0.4
3,586,490	-		LRK55_RS16485	0.87	-0.5
3,586,513	+		LRK55_RS16485	0.89	+3.9
3,586,513	+		LRK55_RS16485	0.89	+1.7
3,586,513	+		LRK55_RS16485	0.89	+0.8
3,586,513	+		LRK55_RS16485	0.89	+0.6
3,586,514	-		LRK55_RS16485	0.89	+0.5
3,586,514	-		LRK55_RS16485	0.89	+0.9
3,586,514	-		LRK55_RS16485	0.89	+0.3
3,586,514	-		LRK55_RS16485	0.89	+0.3
3,586,514	-		LRK55_RS16485	0.89	-0.9
3,586,514	-		LRK55_RS16485	0.89	+1.6
3,586,573	+				+0.7
3,586,573	+				+1.0
3,586,574	-				+1.2
3,586,574	-				+2.3
3,586,574	-				+0.6
3,586,574	-				+0.2
3,586,574	-				+1.0
3,586,574	-				-0.9
3,586,574	-				-0.9
3,586,819	+				+1.1
3,586,819	+				-0.4
3,586,820	-				+0.1
3,586,857	-				-0.0
3,586,857	-				-1.3
3,586,857	-				-0.1
3,586,857	-				+0.7
3,586,857	-				+1.0
3,587,088	+		LRK55_RS16490	0.34	+0.4
3,587,088	+		LRK55_RS16490	0.34	-0.3
3,587,088	+		LRK55_RS16490	0.34	+0.2
3,587,088	+		LRK55_RS16490	0.34	+0.5
3,587,088	+		LRK55_RS16490	0.34	-0.9
3,587,088	+		LRK55_RS16490	0.34	-0.1
3,587,088	+		LRK55_RS16490	0.34	+0.6
3,587,089	-		LRK55_RS16490	0.34	-0.0
3,587,089	-		LRK55_RS16490	0.34	-0.5
3,587,089	-		LRK55_RS16490	0.34	+0.1
3,587,089	-		LRK55_RS16490	0.34	-1.0
3,587,105	+		LRK55_RS16490	0.36	-1.6
3,587,105	+		LRK55_RS16490	0.36	+1.0
3,587,105	+		LRK55_RS16490	0.36	-0.0
3,587,105	+		LRK55_RS16490	0.36	-1.5
3,587,105	+		LRK55_RS16490	0.36	+0.6
3,587,106	-		LRK55_RS16490	0.37	-1.2
3,587,106	-		LRK55_RS16490	0.37	+0.7
3,587,206	+		LRK55_RS16490	0.50	-0.4
3,587,206	+		LRK55_RS16490	0.50	+0.2
3,587,207	-		LRK55_RS16490	0.50	-1.4
3,587,224	+		LRK55_RS16490	0.52	+0.1
3,587,238	+		LRK55_RS16490	0.54	+0.0
3,587,238	+		LRK55_RS16490	0.54	+4.3
3,587,239	-		LRK55_RS16490	0.54	-0.2
3,587,239	-		LRK55_RS16490	0.54	+0.0
3,587,378	+		LRK55_RS16490	0.72	-1.5
3,587,378	+		LRK55_RS16490	0.72	-1.0
3,587,379	-		LRK55_RS16490	0.72	+2.6
3,587,379	-		LRK55_RS16490	0.72	-0.9
3,587,553	+				+1.0
3,587,553	+				-0.7
3,587,553	+				-0.4
3,587,553	+				+0.8
3,587,553	+				-1.0
3,587,553	+				-0.4
3,587,553	+				+0.1
3,587,553	+				-1.6
3,587,553	+				-0.6
3,587,553	+				+0.7
3,587,553	+				+1.6
3,587,553	+				+2.3
3,587,553	+				+0.6
3,587,553	+				+0.4
3,587,553	+				+0.3
3,587,553	+				+0.9
3,587,553	+				-1.2
3,587,553	+				+1.1
3,587,553	+				+1.1
3,587,553	+				-0.7
3,587,553	+				+0.2
3,587,554	-				+0.3
3,587,554	-				+0.7
3,587,554	-				+0.6
3,587,554	-				+1.5
3,587,554	-				-0.4
3,587,554	-				+1.0
3,587,554	-				+0.5
3,587,554	-				-1.3
3,587,554	-				-0.4
3,587,554	-				+0.2
3,587,554	-				+0.1
3,587,554	-				-0.6
3,587,554	-				-1.0
3,587,554	-				+0.6
3,587,554	-				-0.1
3,587,554	-				-2.5
3,587,554	-				-0.1
3,587,554	-				-1.3
3,587,554	-				+0.6
3,587,554	-				-0.2
3,587,554	-				-1.3
3,587,554	-				-0.2
3,587,554	-				-0.6
3,587,554	-				+0.4
3,587,554	-				+0.4
3,587,554	-				-1.1
3,587,554	-				+0.2
3,587,554	-				+0.8
3,587,554	-				+1.8
3,587,689	+				-0.5
3,587,689	+				+1.0
3,587,689	+				+1.4
3,587,689	+				+1.1
3,587,689	+				-0.6
3,587,689	+				+0.4
3,587,689	+				-1.0
3,587,690	-				-0.1
3,587,690	-				-1.0
3,587,690	-				+0.7
3,587,690	-				-2.2
3,587,690	-				-0.6
3,587,690	-				-0.7
3,587,691	+				-0.8
3,587,691	+				-1.6
3,587,691	+				+1.0
3,587,691	+				+0.6
3,587,691	+				-0.2
3,587,691	+				-0.5
3,587,691	+				-0.1
3,587,692	-				-0.6
3,587,692	-				-0.2
3,587,692	-				+1.0
3,587,727	+				+1.2
3,587,805	+				-2.0
3,587,806	-				-2.0
3,587,806	-				-0.7
3,587,806	-				-1.4
3,587,806	-				-0.0
3,587,806	-				+0.2
3,587,816	+				-1.8
3,587,816	+				-0.4
3,587,866	+				-0.9
3,587,866	+				+0.1
3,587,866	+				-0.0
3,587,866	+				-0.6
3,587,866	+				+0.3
3,587,866	+				-0.3
3,587,866	+				+1.0
3,587,866	+				-0.8
3,587,866	+				+0.4
3,587,866	+				+0.6
3,587,866	+				-0.5
3,587,866	+				+0.3
3,587,866	+				+1.2
3,587,866	+				-0.4
3,587,866	+				-0.8
3,587,867	-				+0.4
3,587,867	-				+2.0
3,587,867	-				+2.0
3,587,867	-				-1.2
3,587,867	-				-0.2
3,587,867	-				+1.0
3,587,867	-				-0.3
3,588,041	-		LRK55_RS16495	0.31	+0.5
3,588,241	+		LRK55_RS16495	0.59	-0.0
3,588,242	-		LRK55_RS16495	0.59	-0.7
3,588,242	-		LRK55_RS16495	0.59	-0.0
3,588,242	-		LRK55_RS16495	0.59	+0.1
3,588,341	+		LRK55_RS16495	0.73	-0.8
3,588,341	+		LRK55_RS16495	0.73	-0.3
3,588,341	+		LRK55_RS16495	0.73	-0.2
3,588,342	-		LRK55_RS16495	0.74	+0.3
3,588,342	-		LRK55_RS16495	0.74	+1.0
3,588,406	+		LRK55_RS16495	0.83	+0.7
3,588,406	+		LRK55_RS16495	0.83	+0.4
3,588,407	-		LRK55_RS16495	0.83	-1.0
3,588,407	-		LRK55_RS16495	0.83	-1.0
3,588,407	-		LRK55_RS16495	0.83	-1.1
3,588,407	-		LRK55_RS16495	0.83	+0.3
3,588,407	-		LRK55_RS16495	0.83	+0.6
3,588,407	-		LRK55_RS16495	0.83	+0.5
3,588,541	+				-1.2
3,588,541	+				-0.7
3,588,541	+				-0.2
3,588,541	+				+0.8
3,588,541	+				-1.9
3,588,541	+				+0.2
3,588,542	-				+1.0
3,588,542	-				-0.2
3,588,542	-				-0.9
3,588,542	-				-1.3
3,588,542	-				+0.0
3,588,542	-				+0.8
3,588,542	-				-1.2
3,588,542	-				+0.2