Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS07140

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
1,546,369	-		LRK55_RS07135	0.47	+1.1
1,546,407	+		LRK55_RS07135	0.49	+0.4
1,546,443	+		LRK55_RS07135	0.51	-1.9
1,546,443	+		LRK55_RS07135	0.51	+0.3
1,546,443	+		LRK55_RS07135	0.51	+0.1
1,546,443	+		LRK55_RS07135	0.51	+0.9
1,546,443	+		LRK55_RS07135	0.51	-0.4
1,546,443	+		LRK55_RS07135	0.51	-0.2
1,546,443	+		LRK55_RS07135	0.51	-0.3
1,546,444	-		LRK55_RS07135	0.51	+0.8
1,546,444	-		LRK55_RS07135	0.51	-0.4
1,546,444	-		LRK55_RS07135	0.51	+0.2
1,546,444	-		LRK55_RS07135	0.51	-2.8
1,546,444	-		LRK55_RS07135	0.51	-0.3
1,546,449	+		LRK55_RS07135	0.51	-0.2
1,546,449	+		LRK55_RS07135	0.51	-0.5
1,546,449	+		LRK55_RS07135	0.51	-3.2
1,546,450	-		LRK55_RS07135	0.51	-0.7
1,546,486	+		LRK55_RS07135	0.54	-0.7
1,546,486	+		LRK55_RS07135	0.54	-0.6
1,546,486	+		LRK55_RS07135	0.54	-0.1
1,546,487	-		LRK55_RS07135	0.54	-0.4
1,546,487	-		LRK55_RS07135	0.54	-0.4
1,546,487	-		LRK55_RS07135	0.54	+0.9
1,546,504	+		LRK55_RS07135	0.55	-0.2
1,546,533	+		LRK55_RS07135	0.56	-0.5
1,546,534	-		LRK55_RS07135	0.56	-0.0
1,546,534	-		LRK55_RS07135	0.56	-0.5
1,546,534	-		LRK55_RS07135	0.56	-0.3
1,546,534	-		LRK55_RS07135	0.56	-0.5
1,546,534	-		LRK55_RS07135	0.56	-1.2
1,546,578	+		LRK55_RS07135	0.59	-1.0
1,546,578	+		LRK55_RS07135	0.59	-1.4
1,546,578	+		LRK55_RS07135	0.59	+0.4
1,546,695	+		LRK55_RS07135	0.66	-0.7
1,546,711	-		LRK55_RS07135	0.67	+0.1
1,546,743	-		LRK55_RS07135	0.69	+0.0
1,546,791	+		LRK55_RS07135	0.72	-0.8
1,546,791	+		LRK55_RS07135	0.72	-0.3
1,546,792	-		LRK55_RS07135	0.72	-0.1
1,546,792	-		LRK55_RS07135	0.72	-1.2
1,546,792	-		LRK55_RS07135	0.72	-0.6
1,546,827	+		LRK55_RS07135	0.74	+0.4
1,546,828	-		LRK55_RS07135	0.74	+0.1
1,546,828	-		LRK55_RS07135	0.74	-0.6
1,546,891	-		LRK55_RS07135	0.78	+0.3
1,547,032	-		LRK55_RS07135	0.86	-0.3
1,547,079	+		LRK55_RS07135	0.89	+0.7
1,547,080	-		LRK55_RS07135	0.89	+0.0
1,547,083	+		LRK55_RS07135	0.89	-0.5
1,547,115	-				+0.5
1,547,260	+				-0.6
1,547,260	+				-2.2
1,547,261	-				-0.9
1,547,261	-				+0.7
1,547,295	+				+0.5
1,547,295	+				-0.2
1,547,295	+				-0.6
1,547,296	-				-1.0
1,547,296	-				-1.4
1,547,380	-				-1.6
1,547,380	-				-2.6
1,547,380	-				+0.6
1,547,423	+				-1.4
1,547,486	+				+0.2
1,547,486	+				+0.7
1,547,486	+				-1.2
1,547,487	-				-0.9
1,547,512	+				-1.4
1,547,601	+		LRK55_RS07140	0.13	+0.1
1,547,601	+		LRK55_RS07140	0.13	+0.8
1,547,602	-		LRK55_RS07140	0.13	+0.4
1,547,602	-		LRK55_RS07140	0.13	-0.4
1,547,602	-		LRK55_RS07140	0.13	+0.3
1,547,611	-		LRK55_RS07140	0.13	-0.6
1,547,653	+		LRK55_RS07140	0.15	-0.6
1,547,654	-		LRK55_RS07140	0.15	-1.6
1,547,714	-		LRK55_RS07140	0.18	+0.0
1,547,923	+		LRK55_RS07140	0.27	-0.9
1,547,925	+		LRK55_RS07140	0.27	-0.8
1,547,925	+		LRK55_RS07140	0.27	-1.0
1,547,926	-		LRK55_RS07140	0.27	-0.2
1,547,926	-		LRK55_RS07140	0.27	-1.3
1,547,926	-		LRK55_RS07140	0.27	+0.1
1,547,926	-		LRK55_RS07140	0.27	-0.4
1,548,006	+		LRK55_RS07140	0.30	-0.5
1,548,006	+		LRK55_RS07140	0.30	-0.8
1,548,007	-		LRK55_RS07140	0.30	+0.4
1,548,007	-		LRK55_RS07140	0.30	-0.2
1,548,039	-		LRK55_RS07140	0.31	-0.0
1,548,039	-		LRK55_RS07140	0.31	+0.7
1,548,186	+		LRK55_RS07140	0.38	+0.9
1,548,186	+		LRK55_RS07140	0.38	+0.6
1,548,187	-		LRK55_RS07140	0.38	+0.5
1,548,187	-		LRK55_RS07140	0.38	+0.3
1,548,286	-		LRK55_RS07140	0.42	-0.5
1,548,433	-		LRK55_RS07140	0.48	-1.6
1,548,513	+		LRK55_RS07140	0.51	+0.3
1,548,513	+		LRK55_RS07140	0.51	-3.0
1,548,513	+		LRK55_RS07140	0.51	-0.5
1,548,513	+		LRK55_RS07140	0.51	-1.1
1,548,513	+		LRK55_RS07140	0.51	+0.9
1,548,513	+		LRK55_RS07140	0.51	-1.0
1,548,514	-		LRK55_RS07140	0.51	+0.2
1,548,514	-		LRK55_RS07140	0.51	+1.3
1,548,514	-		LRK55_RS07140	0.51	-0.1
1,548,514	-		LRK55_RS07140	0.51	-1.6
1,548,864	-		LRK55_RS07140	0.66	+0.1
1,548,887	+		LRK55_RS07140	0.67	-0.7
1,549,002	+		LRK55_RS07140	0.72	-1.0
1,549,002	+		LRK55_RS07140	0.72	-0.1
1,549,002	+		LRK55_RS07140	0.72	-0.1
1,549,057	+		LRK55_RS07140	0.74	-1.9
1,549,103	+		LRK55_RS07140	0.76	+0.2
1,549,104	-		LRK55_RS07140	0.76	-1.2
1,549,113	+		LRK55_RS07140	0.77	-0.5
1,549,114	-		LRK55_RS07140	0.77	+0.2
1,549,132	-		LRK55_RS07140	0.78	-1.2
1,549,176	+		LRK55_RS07140	0.79	+0.4
1,549,226	+		LRK55_RS07140	0.82	-0.7
1,549,226	+		LRK55_RS07140	0.82	-1.2
1,549,227	-		LRK55_RS07140	0.82	-0.7
1,549,227	-		LRK55_RS07140	0.82	-0.2
1,549,331	+		LRK55_RS07140	0.86	+0.5
1,549,331	+		LRK55_RS07140	0.86	-1.1
1,549,331	+		LRK55_RS07140	0.86	-0.6
1,549,439	+				+0.7
1,549,440	-				+0.0
1,549,477	-				+0.9
1,549,477	-				+1.3
1,549,477	-				-1.9
1,549,485	+				-0.7
1,549,485	+				+0.1
1,549,497	+				+1.5
1,549,497	+				+0.2
1,549,497	+				-0.1
1,549,497	+				-0.7
1,549,497	+				-0.6
1,549,498	-				-2.4
1,549,534	+				+0.4
1,549,534	+				+0.1
1,549,534	+				-0.1
1,549,535	-				+0.3
1,549,535	-				-2.5
1,549,535	-				+0.2
1,549,653	-				+0.4
1,549,691	+				-0.9
1,549,691	+				-0.4
1,549,692	-				-0.4
1,549,692	-				-0.4
1,549,769	+		LRK55_RS07145	0.11	-1.1
1,549,769	+		LRK55_RS07145	0.11	+0.2
1,549,769	+		LRK55_RS07145	0.11	-0.9
1,549,769	+		LRK55_RS07145	0.11	-0.4
1,549,769	+		LRK55_RS07145	0.11	-0.6
1,549,769	+		LRK55_RS07145	0.11	-0.4
1,549,769	+		LRK55_RS07145	0.11	-0.2
1,549,769	+		LRK55_RS07145	0.11	-0.6
1,549,770	-		LRK55_RS07145	0.11	-0.8
1,549,770	-		LRK55_RS07145	0.11	-1.6
1,549,770	-		LRK55_RS07145	0.11	-0.5
1,549,770	-		LRK55_RS07145	0.11	-1.1
1,549,770	-		LRK55_RS07145	0.11	-0.4
1,549,772	+		LRK55_RS07145	0.11	-0.7
1,549,772	+		LRK55_RS07145	0.11	+1.2
1,549,772	+		LRK55_RS07145	0.11	+0.1
1,549,773	-		LRK55_RS07145	0.11	-1.3
1,549,773	-		LRK55_RS07145	0.11	-1.9
1,549,908	+		LRK55_RS07145	0.25	+1.2
1,549,909	-		LRK55_RS07145	0.25	-1.3
1,549,909	-		LRK55_RS07145	0.25	-1.0
1,549,909	-		LRK55_RS07145	0.25	+0.7
1,549,955	+		LRK55_RS07145	0.30	+0.8
1,550,474	+		LRK55_RS07145	0.83	-0.4
1,550,475	-		LRK55_RS07145	0.83	-0.6
1,550,567	+				-2.2
1,550,567	+				+0.1
1,550,567	+				-0.4
1,550,567	+				+0.3
1,550,567	+				-1.1
1,550,567	+				-0.1
1,550,567	+				-0.5
1,550,567	+				-0.1
1,550,567	-				+0.5
1,550,568	-				+1.8
1,550,568	-				-0.3
1,550,568	-				+0.4
1,550,568	-				-0.8
1,550,568	-				-0.3
1,550,579	+				+1.5