Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS06960

Experiment: no stress control

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	no stress control
1,499,964	+		LRK55_RS06955	0.33	+0.1
1,499,964	+		LRK55_RS06955	0.33	-2.0
1,499,964	+		LRK55_RS06955	0.33	-0.9
1,499,964	+		LRK55_RS06955	0.33	-0.6
1,499,964	+		LRK55_RS06955	0.33	-1.8
1,499,964	+		LRK55_RS06955	0.33	-3.2
1,499,964	+		LRK55_RS06955	0.33	-0.3
1,499,964	+		LRK55_RS06955	0.33	-0.5
1,499,964	+		LRK55_RS06955	0.33	-0.9
1,499,965	-		LRK55_RS06955	0.33	-1.1
1,499,965	-		LRK55_RS06955	0.33	-1.9
1,499,965	-		LRK55_RS06955	0.33	-1.2
1,499,965	-		LRK55_RS06955	0.33	+0.9
1,499,965	-		LRK55_RS06955	0.33	-1.9
1,499,965	-		LRK55_RS06955	0.33	-0.1
1,499,965	-		LRK55_RS06955	0.33	-1.3
1,500,034	-		LRK55_RS06955	0.41	-0.6
1,500,034	-		LRK55_RS06955	0.41	+0.2
1,500,114	+		LRK55_RS06955	0.50	-1.4
1,500,114	+		LRK55_RS06955	0.50	-0.6
1,500,114	+		LRK55_RS06955	0.50	+0.9
1,500,114	+		LRK55_RS06955	0.50	-2.6
1,500,114	+		LRK55_RS06955	0.50	-0.6
1,500,114	+		LRK55_RS06955	0.50	-0.4
1,500,115	-		LRK55_RS06955	0.50	-1.4
1,500,115	-		LRK55_RS06955	0.50	-2.1
1,500,115	-		LRK55_RS06955	0.50	+0.5
1,500,115	-		LRK55_RS06955	0.50	-1.1
1,500,115	-		LRK55_RS06955	0.50	+0.4
1,500,115	-		LRK55_RS06955	0.50	-0.3
1,500,115	-		LRK55_RS06955	0.50	-1.6
1,500,115	-		LRK55_RS06955	0.50	-0.2
1,500,115	-		LRK55_RS06955	0.50	-1.1
1,500,115	-		LRK55_RS06955	0.50	-0.3
1,500,156	+		LRK55_RS06955	0.55	-2.1
1,500,156	+		LRK55_RS06955	0.55	-1.2
1,500,156	+		LRK55_RS06955	0.55	-0.2
1,500,156	+		LRK55_RS06955	0.55	-0.2
1,500,156	+		LRK55_RS06955	0.55	-1.1
1,500,156	+		LRK55_RS06955	0.55	-0.6
1,500,156	+		LRK55_RS06955	0.55	+0.7
1,500,156	+		LRK55_RS06955	0.55	-2.5
1,500,156	+		LRK55_RS06955	0.55	-1.1
1,500,156	+		LRK55_RS06955	0.55	-0.6
1,500,156	+		LRK55_RS06955	0.55	-1.8
1,500,157	-		LRK55_RS06955	0.55	-1.9
1,500,157	-		LRK55_RS06955	0.55	+0.2
1,500,157	-		LRK55_RS06955	0.55	-1.5
1,500,157	-		LRK55_RS06955	0.55	-0.4
1,500,171	+		LRK55_RS06955	0.57	-1.1
1,500,229	+		LRK55_RS06955	0.63	-0.4
1,500,255	+		LRK55_RS06955	0.66	-2.5
1,500,255	+		LRK55_RS06955	0.66	-1.8
1,500,255	+		LRK55_RS06955	0.66	+0.1
1,500,255	+		LRK55_RS06955	0.66	-0.3
1,500,255	+		LRK55_RS06955	0.66	-0.3
1,500,255	+		LRK55_RS06955	0.66	-0.4
1,500,255	+		LRK55_RS06955	0.66	-0.4
1,500,255	+		LRK55_RS06955	0.66	-0.2
1,500,256	-		LRK55_RS06955	0.66	-1.9
1,500,256	-		LRK55_RS06955	0.66	-0.7
1,500,256	-		LRK55_RS06955	0.66	-0.9
1,500,256	-		LRK55_RS06955	0.66	-1.4
1,500,256	-		LRK55_RS06955	0.66	-1.2
1,500,256	-		LRK55_RS06955	0.66	+0.6
1,500,324	+		LRK55_RS06955	0.74	-1.1
1,500,324	+		LRK55_RS06955	0.74	+0.3
1,500,324	+		LRK55_RS06955	0.74	-1.1
1,500,325	-		LRK55_RS06955	0.74	+0.7
1,500,325	-		LRK55_RS06955	0.74	+0.2
1,500,325	-		LRK55_RS06955	0.74	-1.2
1,500,325	-		LRK55_RS06955	0.74	-1.6
1,500,325	-		LRK55_RS06955	0.74	-1.6
1,500,333	+		LRK55_RS06955	0.75	-0.1
1,500,333	+		LRK55_RS06955	0.75	-1.6
1,500,333	+		LRK55_RS06955	0.75	-1.6
1,500,333	+		LRK55_RS06955	0.75	+0.2
1,500,333	+		LRK55_RS06955	0.75	-1.6
1,500,334	-		LRK55_RS06955	0.75	-0.5
1,500,334	-		LRK55_RS06955	0.75	+0.4
1,500,334	-		LRK55_RS06955	0.75	-0.6
1,500,465	+		LRK55_RS06955	0.90	-1.6
1,500,465	+		LRK55_RS06955	0.90	-0.3
1,500,466	-				-0.5
1,500,495	+				+0.5
1,500,552	+				-0.3
1,500,552	+				+0.5
1,500,552	+				-0.2
1,500,553	-				-0.3
1,500,566	-				-0.3
1,500,711	+		LRK55_RS06960	0.15	+0.1
1,500,711	+		LRK55_RS06960	0.15	+0.2
1,500,711	+		LRK55_RS06960	0.15	-0.5
1,500,711	+		LRK55_RS06960	0.15	+0.0
1,500,711	+		LRK55_RS06960	0.15	-0.5
1,500,711	+		LRK55_RS06960	0.15	-0.6
1,500,712	-		LRK55_RS06960	0.15	-0.1
1,500,712	-		LRK55_RS06960	0.15	-0.9
1,500,712	-		LRK55_RS06960	0.15	-0.3
1,500,712	-		LRK55_RS06960	0.15	+1.1
1,500,712	-		LRK55_RS06960	0.15	-0.4
1,500,712	-		LRK55_RS06960	0.15	-2.0
1,500,712	-		LRK55_RS06960	0.15	-0.3
1,500,712	-		LRK55_RS06960	0.15	+0.4
1,500,712	-		LRK55_RS06960	0.15	-0.7
1,500,712	-		LRK55_RS06960	0.15	-0.8
1,500,712	-		LRK55_RS06960	0.15	+0.9
1,500,713	+		LRK55_RS06960	0.15	+0.1
1,500,714	-		LRK55_RS06960	0.15	-0.8
1,500,714	-		LRK55_RS06960	0.15	-0.4
1,500,714	-		LRK55_RS06960	0.15	-1.1
1,500,729	+		LRK55_RS06960	0.18	+1.9
1,500,729	+		LRK55_RS06960	0.18	+1.2
1,500,729	+		LRK55_RS06960	0.18	-2.5
1,500,729	+		LRK55_RS06960	0.18	-0.1
1,500,729	+		LRK55_RS06960	0.18	-0.1
1,500,730	-		LRK55_RS06960	0.18	-1.5
1,500,730	-		LRK55_RS06960	0.18	-0.6
1,500,730	-		LRK55_RS06960	0.18	-0.9
1,500,730	-		LRK55_RS06960	0.18	+0.4
1,500,730	-		LRK55_RS06960	0.18	-0.3
1,500,730	-		LRK55_RS06960	0.18	-2.0
1,500,730	-		LRK55_RS06960	0.18	-1.5
1,500,730	-		LRK55_RS06960	0.18	-0.1
1,500,730	-		LRK55_RS06960	0.18	-1.4
1,500,730	-		LRK55_RS06960	0.18	-2.8
1,500,730	-		LRK55_RS06960	0.18	+0.2
1,500,759	+		LRK55_RS06960	0.22	-0.1
1,500,759	+		LRK55_RS06960	0.22	-0.0
1,500,760	-		LRK55_RS06960	0.22	-0.9
1,500,760	-		LRK55_RS06960	0.22	-0.8
1,500,801	+		LRK55_RS06960	0.29	+0.9
1,500,918	+		LRK55_RS06960	0.47	+0.1
1,500,919	-		LRK55_RS06960	0.47	-1.9
1,500,919	-		LRK55_RS06960	0.47	-0.9
1,500,919	-		LRK55_RS06960	0.47	-0.1
1,500,930	+		LRK55_RS06960	0.48	+0.1
1,500,930	+		LRK55_RS06960	0.48	+0.7
1,500,930	+		LRK55_RS06960	0.48	-0.6
1,500,930	+		LRK55_RS06960	0.48	-0.3
1,500,930	+		LRK55_RS06960	0.48	-0.2
1,500,930	+		LRK55_RS06960	0.48	-0.0
1,500,930	+		LRK55_RS06960	0.48	-0.6
1,500,930	+		LRK55_RS06960	0.48	-0.5
1,500,930	+		LRK55_RS06960	0.48	-0.8
1,500,931	-		LRK55_RS06960	0.49	-0.3
1,500,931	-		LRK55_RS06960	0.49	-0.7
1,500,931	-		LRK55_RS06960	0.49	-1.7
1,500,931	-		LRK55_RS06960	0.49	-1.1
1,500,931	-		LRK55_RS06960	0.49	-1.7
1,500,931	-		LRK55_RS06960	0.49	-1.1
1,500,931	-		LRK55_RS06960	0.49	-1.1
1,500,931	-		LRK55_RS06960	0.49	-0.5
1,500,931	-		LRK55_RS06960	0.49	-0.0
1,500,933	+		LRK55_RS06960	0.49	+0.6
1,500,934	-		LRK55_RS06960	0.49	-0.7
1,500,934	-		LRK55_RS06960	0.49	-0.7
1,501,041	+		LRK55_RS06960	0.65	-2.5
1,501,041	+		LRK55_RS06960	0.65	-0.6
1,501,041	+		LRK55_RS06960	0.65	-0.0
1,501,041	+		LRK55_RS06960	0.65	-0.3
1,501,041	+		LRK55_RS06960	0.65	-2.2
1,501,042	-		LRK55_RS06960	0.66	-0.8
1,501,042	-		LRK55_RS06960	0.66	-0.5
1,501,042	-		LRK55_RS06960	0.66	-0.4
1,501,182	+		LRK55_RS06960	0.87	-2.9
1,501,182	+		LRK55_RS06960	0.87	+0.2
1,501,182	+		LRK55_RS06960	0.87	-1.1
1,501,182	+		LRK55_RS06960	0.87	-0.0
1,501,183	-		LRK55_RS06960	0.87	-0.8
1,501,183	-		LRK55_RS06960	0.87	-0.9
1,501,263	+				-0.1
1,501,263	+				+0.6
1,501,264	-				-0.9
1,501,264	-				+0.0
1,501,264	-				+0.5
1,501,264	-				-0.4
1,501,390	+				+0.3
1,501,390	+				+0.0
1,501,390	+				-2.3
1,501,390	+				-1.2
1,501,390	+				+0.6
1,501,390	+				+0.0
1,501,390	+				-0.6
1,501,390	+				-1.5
1,501,390	+				-0.8
1,501,390	+				+0.1
1,501,391	-				-0.3
1,501,391	-				-0.9
1,501,391	-				-0.8
1,501,391	-				-0.3
1,501,391	-				-1.9
1,501,391	-				-0.8
1,501,391	-				-0.2
1,501,391	-				-1.4
1,501,391	-				-0.7
1,501,391	-				+0.2
1,501,467	+				+0.3
1,501,467	+				+2.3
1,501,467	+				-1.4
1,501,467	+				-2.2
1,501,467	+				-0.7
1,501,468	-				-1.2
1,501,468	-				-0.7
1,501,468	-				-0.2
1,501,504	+		LRK55_RS06965	0.13	-0.0
1,501,504	+		LRK55_RS06965	0.13	-0.5
1,501,504	+		LRK55_RS06965	0.13	-1.1
1,501,505	-		LRK55_RS06965	0.13	-1.1
1,501,505	-		LRK55_RS06965	0.13	-3.0
1,501,505	-		LRK55_RS06965	0.13	+0.7
1,501,505	-		LRK55_RS06965	0.13	-1.1
1,501,505	-		LRK55_RS06965	0.13	+0.1
1,501,505	-		LRK55_RS06965	0.13	-1.9
1,501,505	-		LRK55_RS06965	0.13	+0.1
1,501,505	-		LRK55_RS06965	0.13	-0.4