Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS01540 and LRK55_RS01545 overlap by 4 nucleotides LRK55_RS01545 and LRK55_RS01550 are separated by 29 nucleotides LRK55_RS01550 and LRK55_RS01555 are separated by 78 nucleotides LRK55_RS01555 and LRK55_RS01560 are separated by 6 nucleotides
LRK55_RS01540: LRK55_RS01540 - hypothetical protein, at 329,269 to 330,519
_RS01540
LRK55_RS01545: LRK55_RS01545 - transcription elongation factor GreB, at 330,516 to 331,016
_RS01545
LRK55_RS01550: LRK55_RS01550 - phosphate/phosphite/phosphonate ABC transporter substrate-binding protein, at 331,046 to 332,095
_RS01550
LRK55_RS01555: LRK55_RS01555 - DUF3025 domain-containing protein, at 332,174 to 332,977
_RS01555
LRK55_RS01560: LRK55_RS01560 - 30S ribosomal protein S12 methylthiotransferase RimO, at 332,984 to 334,321
_RS01560
Position (kb) 331
332
333 Strain fitness (log2 ratio) -2
-1
0
1
2 at 330.083 kb on + strand, within LRK55_RS01540 at 330.083 kb on + strand, within LRK55_RS01540 at 330.083 kb on + strand, within LRK55_RS01540 at 330.084 kb on - strand, within LRK55_RS01540 at 330.328 kb on + strand, within LRK55_RS01540 at 330.367 kb on + strand, within LRK55_RS01540 at 330.367 kb on + strand, within LRK55_RS01540 at 330.684 kb on + strand, within LRK55_RS01545 at 330.684 kb on + strand, within LRK55_RS01545 at 330.684 kb on + strand, within LRK55_RS01545 at 330.684 kb on + strand, within LRK55_RS01545 at 330.684 kb on + strand, within LRK55_RS01545 at 330.684 kb on + strand, within LRK55_RS01545 at 330.685 kb on - strand, within LRK55_RS01545 at 330.685 kb on - strand, within LRK55_RS01545 at 330.685 kb on - strand, within LRK55_RS01545 at 330.685 kb on - strand, within LRK55_RS01545 at 330.685 kb on - strand, within LRK55_RS01545 at 330.685 kb on - strand, within LRK55_RS01545 at 330.685 kb on - strand, within LRK55_RS01545 at 330.685 kb on - strand, within LRK55_RS01545 at 330.690 kb on + strand, within LRK55_RS01545 at 330.690 kb on + strand, within LRK55_RS01545 at 330.690 kb on + strand, within LRK55_RS01545 at 330.690 kb on + strand, within LRK55_RS01545 at 330.690 kb on + strand, within LRK55_RS01545 at 330.691 kb on - strand, within LRK55_RS01545 at 330.691 kb on - strand, within LRK55_RS01545 at 330.691 kb on - strand, within LRK55_RS01545 at 330.732 kb on + strand, within LRK55_RS01545 at 330.733 kb on - strand, within LRK55_RS01545 at 330.733 kb on - strand, within LRK55_RS01545 at 330.928 kb on + strand, within LRK55_RS01545 at 330.928 kb on + strand, within LRK55_RS01545 at 330.929 kb on - strand, within LRK55_RS01545 at 330.929 kb on - strand, within LRK55_RS01545 at 330.929 kb on - strand, within LRK55_RS01545 at 330.929 kb on - strand, within LRK55_RS01545 at 330.929 kb on - strand, within LRK55_RS01545 at 330.929 kb on - strand, within LRK55_RS01545 at 331.008 kb on + strand at 331.008 kb on + strand at 331.008 kb on + strand at 331.009 kb on - strand at 331.009 kb on - strand at 331.009 kb on - strand at 331.014 kb on + strand at 331.014 kb on + strand at 331.015 kb on - strand at 331.047 kb on + strand at 331.048 kb on - strand at 331.167 kb on + strand, within LRK55_RS01550 at 331.167 kb on + strand, within LRK55_RS01550 at 331.167 kb on + strand, within LRK55_RS01550 at 331.167 kb on + strand, within LRK55_RS01550 at 331.167 kb on + strand, within LRK55_RS01550 at 331.167 kb on + strand, within LRK55_RS01550 at 331.168 kb on - strand, within LRK55_RS01550 at 331.168 kb on - strand, within LRK55_RS01550 at 331.168 kb on - strand, within LRK55_RS01550 at 331.259 kb on + strand, within LRK55_RS01550 at 331.259 kb on + strand, within LRK55_RS01550 at 331.331 kb on + strand, within LRK55_RS01550 at 331.332 kb on - strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.563 kb on + strand, within LRK55_RS01550 at 331.564 kb on - strand, within LRK55_RS01550 at 331.564 kb on - strand, within LRK55_RS01550 at 331.564 kb on - strand, within LRK55_RS01550 at 331.581 kb on + strand, within LRK55_RS01550 at 331.581 kb on + strand, within LRK55_RS01550 at 331.582 kb on - strand, within LRK55_RS01550 at 331.582 kb on - strand, within LRK55_RS01550 at 331.615 kb on - strand, within LRK55_RS01550 at 331.736 kb on + strand, within LRK55_RS01550 at 331.736 kb on + strand, within LRK55_RS01550 at 331.736 kb on + strand, within LRK55_RS01550 at 331.737 kb on - strand, within LRK55_RS01550 at 331.737 kb on - strand, within LRK55_RS01550 at 331.836 kb on + strand, within LRK55_RS01550 at 331.837 kb on - strand, within LRK55_RS01550 at 331.837 kb on - strand, within LRK55_RS01550 at 331.837 kb on - strand, within LRK55_RS01550 at 331.851 kb on - strand, within LRK55_RS01550 at 331.851 kb on - strand, within LRK55_RS01550 at 332.061 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.129 kb on + strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.130 kb on - strand at 332.131 kb on + strand at 332.131 kb on + strand at 332.131 kb on + strand at 332.131 kb on + strand at 332.131 kb on + strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.132 kb on - strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.133 kb on + strand at 332.134 kb on - strand at 332.134 kb on - strand at 332.134 kb on - strand at 332.134 kb on - strand at 332.134 kb on - strand at 332.134 kb on - strand at 332.134 kb on - strand at 332.199 kb on + strand at 332.226 kb on + strand at 332.227 kb on - strand at 332.604 kb on + strand, within LRK55_RS01555 at 332.604 kb on + strand, within LRK55_RS01555 at 332.605 kb on - strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.775 kb on + strand, within LRK55_RS01555 at 332.776 kb on - strand, within LRK55_RS01555 at 332.776 kb on - strand, within LRK55_RS01555 at 332.776 kb on - strand, within LRK55_RS01555 at 332.970 kb on + strand at 332.971 kb on - strand at 332.985 kb on + strand at 332.985 kb on + strand at 332.986 kb on - strand at 332.986 kb on - strand at 332.986 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 330,083 + LRK55_RS01540 0.65 -0.7 330,083 + LRK55_RS01540 0.65 -0.4 330,083 + LRK55_RS01540 0.65 +0.6 330,084 - LRK55_RS01540 0.65 -1.5 330,328 + LRK55_RS01540 0.85 -0.0 330,367 + LRK55_RS01540 0.88 -0.9 330,367 + LRK55_RS01540 0.88 +1.1 330,684 + LRK55_RS01545 0.34 -0.4 330,684 + LRK55_RS01545 0.34 +0.1 330,684 + LRK55_RS01545 0.34 -0.5 330,684 + LRK55_RS01545 0.34 -0.2 330,684 + LRK55_RS01545 0.34 +0.0 330,684 + LRK55_RS01545 0.34 +0.5 330,685 - LRK55_RS01545 0.34 -0.2 330,685 - LRK55_RS01545 0.34 -2.6 330,685 - LRK55_RS01545 0.34 +0.5 330,685 - LRK55_RS01545 0.34 -0.4 330,685 - LRK55_RS01545 0.34 -0.7 330,685 - LRK55_RS01545 0.34 +1.3 330,685 - LRK55_RS01545 0.34 +0.4 330,685 - LRK55_RS01545 0.34 +1.7 330,690 + LRK55_RS01545 0.35 +0.9 330,690 + LRK55_RS01545 0.35 +1.1 330,690 + LRK55_RS01545 0.35 -0.4 330,690 + LRK55_RS01545 0.35 +1.2 330,690 + LRK55_RS01545 0.35 +0.3 330,691 - LRK55_RS01545 0.35 -1.0 330,691 - LRK55_RS01545 0.35 +0.9 330,691 - LRK55_RS01545 0.35 +2.0 330,732 + LRK55_RS01545 0.43 -0.5 330,733 - LRK55_RS01545 0.43 +0.4 330,733 - LRK55_RS01545 0.43 +0.9 330,928 + LRK55_RS01545 0.82 +0.5 330,928 + LRK55_RS01545 0.82 +0.5 330,929 - LRK55_RS01545 0.82 +0.3 330,929 - LRK55_RS01545 0.82 +0.1 330,929 - LRK55_RS01545 0.82 -0.1 330,929 - LRK55_RS01545 0.82 +0.9 330,929 - LRK55_RS01545 0.82 -1.7 330,929 - LRK55_RS01545 0.82 -1.8 331,008 + -0.9 331,008 + -0.1 331,008 + -2.3 331,009 - -1.0 331,009 - +1.9 331,009 - -0.5 331,014 + +0.3 331,014 + -1.5 331,015 - +1.1 331,047 + -1.7 331,048 - -0.7 331,167 + LRK55_RS01550 0.12 -0.6 331,167 + LRK55_RS01550 0.12 +1.6 331,167 + LRK55_RS01550 0.12 +0.3 331,167 + LRK55_RS01550 0.12 -2.5 331,167 + LRK55_RS01550 0.12 +0.5 331,167 + LRK55_RS01550 0.12 -1.0 331,168 - LRK55_RS01550 0.12 +2.3 331,168 - LRK55_RS01550 0.12 -0.1 331,168 - LRK55_RS01550 0.12 -2.3 331,259 + LRK55_RS01550 0.20 -1.3 331,259 + LRK55_RS01550 0.20 -0.0 331,331 + LRK55_RS01550 0.27 -0.6 331,332 - LRK55_RS01550 0.27 -2.2 331,563 + LRK55_RS01550 0.49 +0.8 331,563 + LRK55_RS01550 0.49 +1.7 331,563 + LRK55_RS01550 0.49 -0.2 331,563 + LRK55_RS01550 0.49 +0.9 331,563 + LRK55_RS01550 0.49 -0.6 331,563 + LRK55_RS01550 0.49 +1.5 331,563 + LRK55_RS01550 0.49 -0.6 331,563 + LRK55_RS01550 0.49 +0.2 331,563 + LRK55_RS01550 0.49 -0.2 331,564 - LRK55_RS01550 0.49 -0.3 331,564 - LRK55_RS01550 0.49 +0.1 331,564 - LRK55_RS01550 0.49 -2.4 331,581 + LRK55_RS01550 0.51 -0.0 331,581 + LRK55_RS01550 0.51 -0.2 331,582 - LRK55_RS01550 0.51 +0.1 331,582 - LRK55_RS01550 0.51 -0.4 331,615 - LRK55_RS01550 0.54 +0.0 331,736 + LRK55_RS01550 0.66 +0.5 331,736 + LRK55_RS01550 0.66 +0.9 331,736 + LRK55_RS01550 0.66 -1.2 331,737 - LRK55_RS01550 0.66 -0.1 331,737 - LRK55_RS01550 0.66 -0.8 331,836 + LRK55_RS01550 0.75 +0.1 331,837 - LRK55_RS01550 0.75 -1.5 331,837 - LRK55_RS01550 0.75 -1.3 331,837 - LRK55_RS01550 0.75 -0.2 331,851 - LRK55_RS01550 0.77 -0.7 331,851 - LRK55_RS01550 0.77 +0.3 332,061 + +2.4 332,129 + +0.9 332,129 + -1.0 332,129 + -0.3 332,129 + +2.3 332,129 + -0.1 332,129 + -2.6 332,129 + +0.1 332,129 + +0.4 332,129 + -0.7 332,129 + -0.1 332,129 + +0.2 332,129 + +0.3 332,129 + +1.4 332,129 + -0.4 332,129 + +0.5 332,129 + -1.0 332,129 + -0.7 332,129 + -0.1 332,130 - +0.5 332,130 - +0.1 332,130 - +0.4 332,130 - -0.7 332,130 - +1.1 332,130 - -1.5 332,130 - -1.3 332,130 - +2.0 332,130 - -0.1 332,130 - +1.1 332,130 - +1.1 332,130 - +0.1 332,130 - +0.1 332,130 - +0.6 332,130 - +0.1 332,130 - -0.9 332,130 - -0.4 332,130 - +0.3 332,130 - +0.5 332,130 - +0.5 332,130 - +0.2 332,130 - -0.2 332,131 + +0.4 332,131 + +0.1 332,131 + -0.8 332,131 + -0.1 332,131 + +0.6 332,132 - +0.5 332,132 - +0.9 332,132 - -0.9 332,132 - +0.0 332,132 - +0.1 332,132 - +0.8 332,132 - -0.5 332,132 - +1.1 332,132 - -1.5 332,133 + -0.3 332,133 + -0.9 332,133 + +0.5 332,133 + +0.5 332,133 + +0.9 332,133 + +0.1 332,133 + -2.1 332,133 + +0.4 332,133 + -0.3 332,133 + -0.9 332,134 - +0.1 332,134 - +0.5 332,134 - +0.4 332,134 - +0.2 332,134 - +0.5 332,134 - +0.1 332,134 - -0.1 332,199 + -0.2 332,226 + -1.6 332,227 - -1.1 332,604 + LRK55_RS01555 0.53 -0.0 332,604 + LRK55_RS01555 0.53 -0.8 332,605 - LRK55_RS01555 0.54 +0.1 332,775 + LRK55_RS01555 0.75 +0.0 332,775 + LRK55_RS01555 0.75 +1.7 332,775 + LRK55_RS01555 0.75 -0.1 332,775 + LRK55_RS01555 0.75 -1.7 332,775 + LRK55_RS01555 0.75 +0.1 332,775 + LRK55_RS01555 0.75 +0.1 332,775 + LRK55_RS01555 0.75 +1.9 332,776 - LRK55_RS01555 0.75 -1.1 332,776 - LRK55_RS01555 0.75 +0.3 332,776 - LRK55_RS01555 0.75 +0.9 332,970 + -1.8 332,971 - +1.1 332,985 + +0.4 332,985 + -0.6 332,986 - -0.4 332,986 - +0.3 332,986 - -0.6
Or see this region's nucleotide sequence