Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK55_RS01220 and LRK55_RS01225 overlap by 12 nucleotides LRK55_RS01225 and LRK55_RS01230 are separated by 19 nucleotides LRK55_RS01230 and LRK55_RS01235 are separated by 450 nucleotides LRK55_RS01235 and LRK55_RS01240 are separated by 4 nucleotides
LRK55_RS01220: LRK55_RS01220 - IS481 family transposase, at 265,169 to 266,140
_RS01220
LRK55_RS01225: LRK55_RS01225 - transposase, at 266,129 to 266,875
_RS01225
LRK55_RS01230: LRK55_RS01230 - IS66 family insertion sequence element accessory protein TnpB, at 266,895 to 267,263
_RS01230
LRK55_RS01235: LRK55_RS01235 - hypothetical protein, at 267,714 to 267,950
_RS01235
LRK55_RS01240: LRK55_RS01240 - RHS repeat-associated core domain-containing protein, at 267,955 to 271,761
_RS01240
Position (kb) 266
267
268 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 265.987 kb on + strand, within LRK55_RS01220 at 265.987 kb on + strand, within LRK55_RS01220 at 265.987 kb on + strand, within LRK55_RS01220 at 266.012 kb on + strand, within LRK55_RS01220 at 266.013 kb on - strand, within LRK55_RS01220 at 266.013 kb on - strand, within LRK55_RS01220 at 266.105 kb on - strand at 266.105 kb on - strand at 266.138 kb on + strand at 266.138 kb on + strand at 266.138 kb on + strand at 266.139 kb on - strand at 266.268 kb on + strand, within LRK55_RS01225 at 266.268 kb on + strand, within LRK55_RS01225 at 266.269 kb on - strand, within LRK55_RS01225 at 266.321 kb on + strand, within LRK55_RS01225 at 266.888 kb on + strand at 267.112 kb on + strand, within LRK55_RS01230 at 267.112 kb on + strand, within LRK55_RS01230 at 267.112 kb on + strand, within LRK55_RS01230 at 267.113 kb on - strand, within LRK55_RS01230 at 267.113 kb on - strand, within LRK55_RS01230 at 267.113 kb on - strand, within LRK55_RS01230 at 267.113 kb on - strand, within LRK55_RS01230 at 267.113 kb on - strand, within LRK55_RS01230 at 267.113 kb on - strand, within LRK55_RS01230 at 267.267 kb on + strand at 267.267 kb on + strand at 267.268 kb on - strand at 267.291 kb on + strand at 267.292 kb on - strand at 267.292 kb on - strand at 267.310 kb on + strand at 267.310 kb on + strand at 267.310 kb on + strand at 267.321 kb on + strand at 267.321 kb on + strand at 267.322 kb on - strand at 267.322 kb on - strand at 267.322 kb on - strand at 267.374 kb on - strand at 267.399 kb on - strand at 267.399 kb on - strand at 267.406 kb on + strand at 267.407 kb on - strand at 267.407 kb on - strand at 267.407 kb on - strand at 267.415 kb on + strand at 267.415 kb on + strand at 267.415 kb on + strand at 267.416 kb on - strand at 267.416 kb on - strand at 267.416 kb on - strand at 267.416 kb on - strand at 267.417 kb on + strand at 267.417 kb on + strand at 267.417 kb on + strand at 267.417 kb on + strand at 267.418 kb on - strand at 267.418 kb on - strand at 267.418 kb on - strand at 267.418 kb on - strand at 267.418 kb on - strand at 267.418 kb on - strand at 267.699 kb on + strand at 267.699 kb on + strand at 267.699 kb on + strand at 267.699 kb on + strand at 267.700 kb on - strand at 267.700 kb on - strand at 267.700 kb on - strand at 267.915 kb on + strand, within LRK55_RS01235 at 267.952 kb on + strand at 267.953 kb on - strand at 267.960 kb on + strand at 268.015 kb on - strand at 268.015 kb on - strand at 268.066 kb on + strand at 268.067 kb on - strand at 268.100 kb on + strand at 268.100 kb on + strand at 268.100 kb on + strand at 268.101 kb on - strand at 268.101 kb on - strand at 268.101 kb on - strand at 268.108 kb on + strand at 268.108 kb on + strand at 268.164 kb on + strand at 268.164 kb on + strand at 268.164 kb on + strand at 268.164 kb on + strand at 268.165 kb on - strand at 268.165 kb on - strand at 268.165 kb on - strand at 268.166 kb on + strand at 268.166 kb on + strand at 268.166 kb on + strand at 268.166 kb on + strand at 268.166 kb on + strand at 268.166 kb on + strand at 268.167 kb on - strand at 268.167 kb on - strand at 268.220 kb on - strand at 268.228 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 265,987 + LRK55_RS01220 0.84 -0.2 265,987 + LRK55_RS01220 0.84 -1.1 265,987 + LRK55_RS01220 0.84 +0.4 266,012 + LRK55_RS01220 0.87 +0.1 266,013 - LRK55_RS01220 0.87 +0.6 266,013 - LRK55_RS01220 0.87 -0.9 266,105 - -0.9 266,105 - +0.7 266,138 + -0.7 266,138 + -0.5 266,138 + +2.1 266,139 - -0.4 266,268 + LRK55_RS01225 0.19 -1.0 266,268 + LRK55_RS01225 0.19 -0.1 266,269 - LRK55_RS01225 0.19 +0.9 266,321 + LRK55_RS01225 0.26 -0.4 266,888 + -0.9 267,112 + LRK55_RS01230 0.59 -0.4 267,112 + LRK55_RS01230 0.59 +1.5 267,112 + LRK55_RS01230 0.59 +0.7 267,113 - LRK55_RS01230 0.59 -0.6 267,113 - LRK55_RS01230 0.59 -1.0 267,113 - LRK55_RS01230 0.59 -0.8 267,113 - LRK55_RS01230 0.59 -0.1 267,113 - LRK55_RS01230 0.59 -0.0 267,113 - LRK55_RS01230 0.59 -0.0 267,267 + -0.1 267,267 + +0.2 267,268 - +0.1 267,291 + +0.5 267,292 - -1.1 267,292 - +0.3 267,310 + +2.1 267,310 + -0.1 267,310 + -0.4 267,321 + -0.3 267,321 + -0.2 267,322 - -1.7 267,322 - +0.3 267,322 - -1.7 267,374 - -0.5 267,399 - +0.1 267,399 - -0.4 267,406 + -0.9 267,407 - -0.0 267,407 - -0.9 267,407 - -1.7 267,415 + -0.2 267,415 + -0.5 267,415 + -0.6 267,416 - -2.2 267,416 - -1.1 267,416 - -0.2 267,416 - +0.5 267,417 + +1.4 267,417 + -1.0 267,417 + -0.3 267,417 + -0.4 267,418 - +0.1 267,418 - -0.5 267,418 - -0.4 267,418 - -0.5 267,418 - -0.3 267,418 - +1.6 267,699 + +0.1 267,699 + -0.7 267,699 + -2.0 267,699 + +0.9 267,700 - -0.2 267,700 - -0.9 267,700 - +0.9 267,915 + LRK55_RS01235 0.85 -0.7 267,952 + -1.7 267,953 - -2.3 267,960 + -0.9 268,015 - +0.7 268,015 - -1.8 268,066 + -1.2 268,067 - -0.1 268,100 + -0.2 268,100 + -2.0 268,100 + -0.9 268,101 - -0.7 268,101 - -1.3 268,101 - -0.5 268,108 + -1.1 268,108 + -0.1 268,164 + -1.4 268,164 + +0.5 268,164 + -0.6 268,164 + -0.1 268,165 - -3.4 268,165 - -1.9 268,165 - -1.4 268,166 + -0.9 268,166 + -0.5 268,166 + -1.1 268,166 + -0.6 268,166 + -0.6 268,166 + -1.2 268,167 - -0.3 268,167 - +0.5 268,220 - -1.6 268,228 + -1.4
Or see this region's nucleotide sequence