Experiment: Anaerobic; Aluminium sulfate 215 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS04280 and ABCV34_RS04285 are separated by 170 nucleotides ABCV34_RS04285 and ABCV34_RS04290 are separated by 9 nucleotides ABCV34_RS04290 and ABCV34_RS04295 are separated by 108 nucleotides
ABCV34_RS04280: ABCV34_RS04280 - 3-isopropylmalate dehydrogenase, at 934,822 to 935,898
_RS04280
ABCV34_RS04285: ABCV34_RS04285 - 3-isopropylmalate dehydratase small subunit, at 936,069 to 936,725
_RS04285
ABCV34_RS04290: ABCV34_RS04290 - 3-isopropylmalate dehydratase large subunit, at 936,735 to 938,138
_RS04290
ABCV34_RS04295: ABCV34_RS04295 - M48 family metallopeptidase, at 938,247 to 939,038
_RS04295
Position (kb) 936
937
938
939 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1 at 935.768 kb on + strand, within ABCV34_RS04280 at 935.768 kb on + strand, within ABCV34_RS04280 at 935.769 kb on - strand, within ABCV34_RS04280 at 935.915 kb on + strand at 935.916 kb on - strand at 936.392 kb on - strand, within ABCV34_RS04285 at 936.422 kb on - strand, within ABCV34_RS04285 at 936.422 kb on - strand, within ABCV34_RS04285 at 936.584 kb on - strand, within ABCV34_RS04285 at 936.584 kb on - strand, within ABCV34_RS04285 at 936.737 kb on - strand at 936.964 kb on - strand, within ABCV34_RS04290 at 937.165 kb on + strand, within ABCV34_RS04290 at 937.165 kb on + strand, within ABCV34_RS04290 at 937.165 kb on + strand, within ABCV34_RS04290 at 937.165 kb on + strand, within ABCV34_RS04290 at 937.165 kb on + strand, within ABCV34_RS04290 at 937.165 kb on + strand, within ABCV34_RS04290 at 937.165 kb on + strand, within ABCV34_RS04290 at 937.166 kb on - strand, within ABCV34_RS04290 at 937.166 kb on - strand, within ABCV34_RS04290 at 937.166 kb on - strand, within ABCV34_RS04290 at 937.166 kb on - strand, within ABCV34_RS04290 at 937.166 kb on - strand, within ABCV34_RS04290 at 937.166 kb on - strand, within ABCV34_RS04290 at 937.166 kb on - strand, within ABCV34_RS04290 at 937.166 kb on - strand, within ABCV34_RS04290 at 937.166 kb on - strand, within ABCV34_RS04290 at 937.166 kb on - strand, within ABCV34_RS04290 at 937.166 kb on - strand, within ABCV34_RS04290 at 937.166 kb on - strand, within ABCV34_RS04290 at 937.397 kb on - strand, within ABCV34_RS04290 at 937.414 kb on + strand, within ABCV34_RS04290 at 937.568 kb on + strand, within ABCV34_RS04290 at 937.582 kb on + strand, within ABCV34_RS04290 at 937.582 kb on + strand, within ABCV34_RS04290 at 937.583 kb on - strand, within ABCV34_RS04290 at 937.583 kb on - strand, within ABCV34_RS04290 at 937.583 kb on - strand, within ABCV34_RS04290 at 937.583 kb on - strand, within ABCV34_RS04290 at 938.031 kb on - strand at 938.060 kb on + strand at 938.060 kb on + strand at 938.061 kb on - strand at 938.062 kb on + strand at 938.062 kb on + strand at 938.062 kb on + strand at 938.062 kb on + strand at 938.062 kb on + strand at 938.062 kb on + strand at 938.062 kb on + strand at 938.062 kb on + strand at 938.062 kb on + strand at 938.062 kb on + strand at 938.062 kb on + strand at 938.063 kb on - strand at 938.063 kb on - strand at 938.063 kb on - strand at 938.063 kb on - strand at 938.063 kb on - strand at 938.063 kb on - strand at 938.122 kb on + strand at 938.122 kb on + strand at 938.123 kb on - strand at 938.123 kb on - strand at 938.123 kb on - strand at 938.170 kb on + strand at 938.170 kb on + strand at 938.170 kb on + strand at 938.170 kb on + strand at 938.206 kb on + strand at 938.206 kb on + strand at 938.211 kb on + strand at 938.214 kb on + strand at 938.214 kb on + strand at 938.215 kb on - strand at 938.215 kb on - strand at 938.215 kb on - strand at 938.215 kb on - strand at 938.215 kb on - strand at 938.217 kb on + strand at 938.218 kb on - strand at 938.218 kb on - strand at 938.224 kb on - strand at 938.224 kb on - strand at 938.263 kb on + strand at 938.264 kb on - strand at 938.264 kb on - strand at 938.264 kb on - strand at 938.271 kb on + strand at 938.686 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.947 kb on + strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.948 kb on - strand, within ABCV34_RS04295 at 938.985 kb on - strand at 938.985 kb on - strand at 939.050 kb on + strand at 939.051 kb on - strand at 939.121 kb on + strand at 939.121 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Anaerobic; Aluminium sulfate 215 uM remove 935,768 + ABCV34_RS04280 0.88 -2.7 935,768 + ABCV34_RS04280 0.88 -2.2 935,769 - ABCV34_RS04280 0.88 -2.4 935,915 + -2.4 935,916 - -1.9 936,392 - ABCV34_RS04285 0.49 -3.4 936,422 - ABCV34_RS04285 0.54 -2.4 936,422 - ABCV34_RS04285 0.54 -3.0 936,584 - ABCV34_RS04285 0.78 -6.4 936,584 - ABCV34_RS04285 0.78 -7.5 936,737 - -2.4 936,964 - ABCV34_RS04290 0.16 -5.2 937,165 + ABCV34_RS04290 0.31 -1.9 937,165 + ABCV34_RS04290 0.31 -3.3 937,165 + ABCV34_RS04290 0.31 -1.9 937,165 + ABCV34_RS04290 0.31 -2.9 937,165 + ABCV34_RS04290 0.31 -2.2 937,165 + ABCV34_RS04290 0.31 -0.2 937,165 + ABCV34_RS04290 0.31 -0.6 937,166 - ABCV34_RS04290 0.31 -2.7 937,166 - ABCV34_RS04290 0.31 -2.7 937,166 - ABCV34_RS04290 0.31 -5.4 937,166 - ABCV34_RS04290 0.31 -5.9 937,166 - ABCV34_RS04290 0.31 -5.2 937,166 - ABCV34_RS04290 0.31 -5.0 937,166 - ABCV34_RS04290 0.31 -3.2 937,166 - ABCV34_RS04290 0.31 -4.7 937,166 - ABCV34_RS04290 0.31 -5.2 937,166 - ABCV34_RS04290 0.31 -4.0 937,166 - ABCV34_RS04290 0.31 -4.9 937,166 - ABCV34_RS04290 0.31 -2.2 937,397 - ABCV34_RS04290 0.47 -5.7 937,414 + ABCV34_RS04290 0.48 -1.9 937,568 + ABCV34_RS04290 0.59 -0.9 937,582 + ABCV34_RS04290 0.60 -2.4 937,582 + ABCV34_RS04290 0.60 -2.4 937,583 - ABCV34_RS04290 0.60 -2.8 937,583 - ABCV34_RS04290 0.60 -4.3 937,583 - ABCV34_RS04290 0.60 -4.4 937,583 - ABCV34_RS04290 0.60 -2.2 938,031 - -4.4 938,060 + -0.9 938,060 + -1.9 938,061 - -5.0 938,062 + -2.2 938,062 + +0.1 938,062 + -3.0 938,062 + -2.4 938,062 + -2.4 938,062 + -0.9 938,062 + -0.9 938,062 + -2.7 938,062 + -0.4 938,062 + -1.4 938,062 + -3.0 938,063 - -3.2 938,063 - -6.1 938,063 - -3.2 938,063 - -4.0 938,063 - -4.4 938,063 - -3.7 938,122 + -2.4 938,122 + -3.7 938,123 - -5.1 938,123 - -2.2 938,123 - -4.7 938,170 + +0.1 938,170 + -3.8 938,170 + -2.9 938,170 + -1.9 938,206 + -2.1 938,206 + -2.7 938,211 + -3.3 938,214 + -2.2 938,214 + -3.6 938,215 - -0.9 938,215 - -0.9 938,215 - -3.3 938,215 - -1.6 938,215 - -1.4 938,217 + -1.4 938,218 - -2.2 938,218 - -1.9 938,224 - -2.3 938,224 - -1.6 938,263 + -1.5 938,264 - -2.9 938,264 - -2.7 938,264 - -1.4 938,271 + -0.9 938,686 + ABCV34_RS04295 0.55 -2.2 938,947 + ABCV34_RS04295 0.88 -3.3 938,947 + ABCV34_RS04295 0.88 -2.0 938,947 + ABCV34_RS04295 0.88 -1.5 938,947 + ABCV34_RS04295 0.88 -3.2 938,947 + ABCV34_RS04295 0.88 -2.0 938,947 + ABCV34_RS04295 0.88 -2.8 938,947 + ABCV34_RS04295 0.88 -1.9 938,947 + ABCV34_RS04295 0.88 -1.7 938,947 + ABCV34_RS04295 0.88 -0.7 938,947 + ABCV34_RS04295 0.88 -2.3 938,947 + ABCV34_RS04295 0.88 -2.7 938,947 + ABCV34_RS04295 0.88 -2.2 938,947 + ABCV34_RS04295 0.88 -1.6 938,947 + ABCV34_RS04295 0.88 +0.1 938,947 + ABCV34_RS04295 0.88 -0.7 938,947 + ABCV34_RS04295 0.88 -2.0 938,947 + ABCV34_RS04295 0.88 +1.1 938,948 - ABCV34_RS04295 0.89 -1.9 938,948 - ABCV34_RS04295 0.89 -0.4 938,948 - ABCV34_RS04295 0.89 -1.4 938,948 - ABCV34_RS04295 0.89 -1.3 938,948 - ABCV34_RS04295 0.89 +0.1 938,948 - ABCV34_RS04295 0.89 -1.6 938,948 - ABCV34_RS04295 0.89 -0.7 938,948 - ABCV34_RS04295 0.89 -2.2 938,948 - ABCV34_RS04295 0.89 -1.8 938,948 - ABCV34_RS04295 0.89 -1.9 938,948 - ABCV34_RS04295 0.89 -1.8 938,948 - ABCV34_RS04295 0.89 -1.9 938,948 - ABCV34_RS04295 0.89 +1.0 938,948 - ABCV34_RS04295 0.89 -0.1 938,948 - ABCV34_RS04295 0.89 -1.6 938,948 - ABCV34_RS04295 0.89 -1.9 938,948 - ABCV34_RS04295 0.89 -1.3 938,985 - -0.7 938,985 - -1.0 939,050 + -1.5 939,051 - -2.9 939,121 + -2.0 939,121 + -1.6
Or see this region's nucleotide sequence