Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS19690

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
2,449,894	+				+0.1
2,449,895	-				-0.0
2,450,051	+				-0.1
2,450,199	+				-1.2
2,450,199	+				-0.5
2,450,199	+				-0.1
2,450,199	+				+1.8
2,450,199	+				+0.7
2,450,200	-				+0.1
2,450,200	-				-0.8
2,450,200	-				+1.1
2,450,200	-				+0.5
2,450,546	+				+0.8
2,450,546	+				+0.4
2,450,547	-				-0.7
2,450,584	+				-0.5
2,450,585	-				+0.5
2,450,585	-				-0.3
2,450,585	-				-1.1
2,450,599	+				+0.7
2,450,599	+				+0.7
2,450,599	+				-1.3
2,450,599	+				-3.1
2,450,600	-				+1.7
2,450,600	-				+0.8
2,450,600	-				-0.3
2,450,685	+				-0.5
2,450,685	+				+0.3
2,450,685	+				+0.4
2,450,685	+				-0.1
2,450,685	+				-2.5
2,450,685	+				+0.7
2,450,685	+				-0.9
2,450,686	-				+0.7
2,450,686	-				-1.7
2,450,686	-				-0.5
2,450,686	-				+1.3
2,450,686	-				+0.3
2,450,686	-				-0.2
2,450,713	-		LRK55_RS11125	0.11	-0.5
2,450,937	+		LRK55_RS11125	0.44	+0.1
2,450,937	+		LRK55_RS11125	0.44	+0.8
2,450,937	+		LRK55_RS11125	0.44	+0.5
2,450,937	+		LRK55_RS11125	0.44	-0.6
2,450,937	+		LRK55_RS11125	0.44	+0.8
2,450,959	+		LRK55_RS11125	0.47	-1.9
2,450,959	+		LRK55_RS11125	0.47	-0.3
2,450,959	+		LRK55_RS11125	0.47	+1.3
2,450,959	+		LRK55_RS11125	0.47	+0.1
2,450,960	-		LRK55_RS11125	0.47	+0.8
2,450,960	-		LRK55_RS11125	0.47	+0.2