Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS18865

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
112,908	+		LRK55_RS18860	0.25	-0.3
112,908	+		LRK55_RS18860	0.25	-1.9
112,909	-		LRK55_RS18860	0.25	-1.5
112,935	+		LRK55_RS18860	0.27	+0.8
112,953	-		LRK55_RS18860	0.28	+0.2
113,025	+		LRK55_RS18860	0.34	-1.2
113,025	+		LRK55_RS18860	0.34	+1.3
113,025	+		LRK55_RS18860	0.34	+2.7
113,025	+		LRK55_RS18860	0.34	+0.5
113,025	+		LRK55_RS18860	0.34	-0.7
113,025	+		LRK55_RS18860	0.34	-0.5
113,025	+		LRK55_RS18860	0.34	+2.9
113,025	+		LRK55_RS18860	0.34	-1.0
113,026	-		LRK55_RS18860	0.34	-0.3
113,026	-		LRK55_RS18860	0.34	+0.6
113,026	-		LRK55_RS18860	0.34	-0.5
113,026	-		LRK55_RS18860	0.34	-0.3
113,029	+		LRK55_RS18860	0.34	-0.2
113,029	+		LRK55_RS18860	0.34	-1.5
113,029	+		LRK55_RS18860	0.34	+0.1
113,030	-		LRK55_RS18860	0.35	-1.2
113,030	-		LRK55_RS18860	0.35	-0.2
113,102	-		LRK55_RS18860	0.40	+0.0
113,102	-		LRK55_RS18860	0.40	+0.1
113,105	+		LRK55_RS18860	0.40	-2.0
113,105	+		LRK55_RS18860	0.40	-1.2
113,106	-		LRK55_RS18860	0.41	-0.7
113,116	+		LRK55_RS18860	0.41	+0.3
113,116	+		LRK55_RS18860	0.41	-0.0
113,133	+		LRK55_RS18860	0.43	+0.4
113,134	-		LRK55_RS18860	0.43	-0.6
113,134	-		LRK55_RS18860	0.43	-1.4
113,134	-		LRK55_RS18860	0.43	-0.0
113,275	-		LRK55_RS18860	0.54	-0.6
113,569	+		LRK55_RS18860	0.77	-0.3
113,569	+		LRK55_RS18860	0.77	+1.9
113,570	-		LRK55_RS18860	0.77	-0.5
113,570	-		LRK55_RS18860	0.77	+1.0
113,656	+		LRK55_RS18860	0.84	+0.7
113,657	-		LRK55_RS18860	0.84	-1.7
113,680	+		LRK55_RS18860	0.86	+0.6
113,681	-		LRK55_RS18860	0.86	-1.7
113,681	-		LRK55_RS18860	0.86	+0.8
113,808	-				+0.9
113,894	+				-0.2
113,894	+				+0.0
113,894	+				-0.3
113,895	-				-0.7
113,913	-				-1.7
113,913	-				-0.2
113,913	-				-0.0
113,949	-				+0.0
113,949	-				+0.5
114,249	-		LRK55_RS18865	0.22	+1.9
114,249	-		LRK55_RS18865	0.22	-0.1
114,249	-		LRK55_RS18865	0.22	-0.5
114,315	+		LRK55_RS18865	0.26	-0.0
114,316	-		LRK55_RS18865	0.26	+1.0
114,344	+		LRK55_RS18865	0.28	-0.5
114,621	+		LRK55_RS18865	0.43	-2.5
114,621	+		LRK55_RS18865	0.43	-0.8
114,621	+		LRK55_RS18865	0.43	-2.2
114,621	+		LRK55_RS18865	0.43	-0.1
114,621	+		LRK55_RS18865	0.43	-1.1
114,622	-		LRK55_RS18865	0.43	-1.1
114,622	-		LRK55_RS18865	0.43	+0.5
114,622	-		LRK55_RS18865	0.43	-1.2
114,622	-		LRK55_RS18865	0.43	+1.9
114,624	-		LRK55_RS18865	0.43	+0.4
114,624	-		LRK55_RS18865	0.43	+1.7
114,660	-		LRK55_RS18865	0.45	-0.6
114,660	-		LRK55_RS18865	0.45	-0.4
114,825	+		LRK55_RS18865	0.55	-0.6
114,826	-		LRK55_RS18865	0.55	-2.9
114,866	+		LRK55_RS18865	0.57	+0.3
114,866	+		LRK55_RS18865	0.57	-0.7
114,866	+		LRK55_RS18865	0.57	-1.6
114,866	+		LRK55_RS18865	0.57	+0.5
114,866	+		LRK55_RS18865	0.57	-0.2
114,866	+		LRK55_RS18865	0.57	+0.3
114,866	+		LRK55_RS18865	0.57	-0.5
114,866	+		LRK55_RS18865	0.57	-0.6
114,867	-		LRK55_RS18865	0.57	-0.4
114,867	-		LRK55_RS18865	0.57	+0.3
114,867	-		LRK55_RS18865	0.57	+0.4
114,867	-		LRK55_RS18865	0.57	-0.4
114,867	-		LRK55_RS18865	0.57	-0.9
114,867	-		LRK55_RS18865	0.57	-1.1
114,872	+		LRK55_RS18865	0.57	-0.2
114,872	+		LRK55_RS18865	0.57	-0.5
114,872	+		LRK55_RS18865	0.57	+0.5
114,872	+		LRK55_RS18865	0.57	-0.4
114,872	+		LRK55_RS18865	0.57	-0.3
114,872	+		LRK55_RS18865	0.57	-1.1
114,872	+		LRK55_RS18865	0.57	+0.6
114,873	-		LRK55_RS18865	0.57	+0.3
114,873	-		LRK55_RS18865	0.57	+0.8
114,873	-		LRK55_RS18865	0.57	-0.3
114,873	-		LRK55_RS18865	0.57	+0.3
114,873	-		LRK55_RS18865	0.57	-0.1
114,873	-		LRK55_RS18865	0.57	+0.1
114,873	-		LRK55_RS18865	0.57	+0.5
114,873	-		LRK55_RS18865	0.57	-0.2
114,873	-		LRK55_RS18865	0.57	-0.7
114,873	-		LRK55_RS18865	0.57	+0.2
114,873	-		LRK55_RS18865	0.57	+0.5
114,873	-		LRK55_RS18865	0.57	+1.1
114,879	-		LRK55_RS18865	0.58	-2.2
115,013	+		LRK55_RS18865	0.65	-2.3
115,013	+		LRK55_RS18865	0.65	-0.3
115,016	+		LRK55_RS18865	0.65	+0.4
115,016	+		LRK55_RS18865	0.65	-0.2
115,016	+		LRK55_RS18865	0.65	-1.4
115,032	+		LRK55_RS18865	0.66	-0.5
115,032	+		LRK55_RS18865	0.66	-0.3
115,091	+		LRK55_RS18865	0.70	+1.4
115,091	+		LRK55_RS18865	0.70	+0.5
115,091	+		LRK55_RS18865	0.70	-2.3
115,148	+		LRK55_RS18865	0.73	-0.9
115,148	+		LRK55_RS18865	0.73	+0.8
115,187	+		LRK55_RS18865	0.75	-0.9
115,187	+		LRK55_RS18865	0.75	+0.1
115,187	+		LRK55_RS18865	0.75	-1.0
115,187	+		LRK55_RS18865	0.75	+0.5
115,187	+		LRK55_RS18865	0.75	+1.0
115,187	+		LRK55_RS18865	0.75	+2.3
115,188	-		LRK55_RS18865	0.75	-0.1
115,193	+		LRK55_RS18865	0.75	+0.1
115,193	+		LRK55_RS18865	0.75	-0.1
115,193	+		LRK55_RS18865	0.75	+0.8
115,193	+		LRK55_RS18865	0.75	+1.1
115,193	+		LRK55_RS18865	0.75	+1.1
115,193	+		LRK55_RS18865	0.75	-0.2
115,193	+		LRK55_RS18865	0.75	-0.4
115,194	-		LRK55_RS18865	0.75	-0.5
115,194	-		LRK55_RS18865	0.75	-0.5
115,194	-		LRK55_RS18865	0.75	+0.5
115,194	-		LRK55_RS18865	0.75	-0.3
115,194	-		LRK55_RS18865	0.75	+0.3
115,194	-		LRK55_RS18865	0.75	-0.2
115,194	-		LRK55_RS18865	0.75	-0.9
115,194	-		LRK55_RS18865	0.75	-0.3
115,194	-		LRK55_RS18865	0.75	-0.3
115,223	+		LRK55_RS18865	0.77	-0.5
115,223	+		LRK55_RS18865	0.77	+0.4
115,224	-		LRK55_RS18865	0.77	-0.3
115,224	-		LRK55_RS18865	0.77	-0.8
115,224	-		LRK55_RS18865	0.77	-1.5
115,436	+		LRK55_RS18865	0.89	-0.1
115,436	+		LRK55_RS18865	0.89	-0.8
115,436	+		LRK55_RS18865	0.89	+0.2
115,436	+		LRK55_RS18865	0.89	+0.2
115,436	+		LRK55_RS18865	0.89	+0.1
115,436	+		LRK55_RS18865	0.89	-0.4
115,437	-		LRK55_RS18865	0.89	-1.0
115,437	-		LRK55_RS18865	0.89	+0.2
115,437	-		LRK55_RS18865	0.89	-0.3
115,437	-		LRK55_RS18865	0.89	+0.7
115,458	+				+0.1
115,775	+				-0.5
115,892	+		LRK55_RS18870	0.37	+0.4
115,892	+		LRK55_RS18870	0.37	+0.1
115,892	+		LRK55_RS18870	0.37	+1.2
115,892	+		LRK55_RS18870	0.37	-0.2
115,893	-		LRK55_RS18870	0.37	+0.3
115,893	-		LRK55_RS18870	0.37	-1.4
115,893	-		LRK55_RS18870	0.37	+1.2
115,893	-		LRK55_RS18870	0.37	-0.1
115,893	-		LRK55_RS18870	0.37	-0.3
115,893	-		LRK55_RS18870	0.37	+0.3
115,893	-		LRK55_RS18870	0.37	-0.7
115,893	-		LRK55_RS18870	0.37	+0.2
115,968	+		LRK55_RS18870	0.55	-1.5
115,968	+		LRK55_RS18870	0.55	+0.0
115,968	+		LRK55_RS18870	0.55	-0.5
115,968	+		LRK55_RS18870	0.55	-0.0
115,968	+		LRK55_RS18870	0.55	-0.2
115,968	+		LRK55_RS18870	0.55	-1.5
115,969	-		LRK55_RS18870	0.55	-1.0
115,969	-		LRK55_RS18870	0.55	-1.2
115,969	-		LRK55_RS18870	0.55	-1.2
116,150	+				+0.0
116,150	+				-2.1
116,151	-				-0.7
116,151	-				+0.2
116,151	-				-2.5
116,151	-				-0.1
116,162	-				-0.5
116,162	-				+0.1
116,162	-				-0.5
116,162	-				+0.3
116,229	+				-0.4
116,229	+				-1.3
116,229	+				-0.1
116,229	+				-0.5
116,229	+				+1.0
116,230	-				+0.0
116,230	-				+0.9
116,230	-				-1.6
116,230	-				+0.1
116,230	-				-0.5
116,230	-				+0.2
116,230	-				-0.8
116,301	+		LRK55_RS18875	0.28	-0.5
116,301	+		LRK55_RS18875	0.28	-0.9
116,301	+		LRK55_RS18875	0.28	-3.0
116,301	+		LRK55_RS18875	0.28	-0.5
116,303	-		LRK55_RS18875	0.28	-0.5
116,373	+		LRK55_RS18875	0.50	-0.2
116,373	+		LRK55_RS18875	0.50	-0.1
116,373	+		LRK55_RS18875	0.50	-2.8
116,374	-		LRK55_RS18875	0.50	+0.1
116,374	-		LRK55_RS18875	0.50	-0.5
116,374	-		LRK55_RS18875	0.50	-0.1
116,374	-		LRK55_RS18875	0.50	-2.0
116,374	-		LRK55_RS18875	0.50	-0.2
116,374	-		LRK55_RS18875	0.50	-0.8
116,374	-		LRK55_RS18875	0.50	-0.9
116,394	+		LRK55_RS18875	0.56	+0.5
116,394	+		LRK55_RS18875	0.56	+0.8
116,394	+		LRK55_RS18875	0.56	-0.8
116,395	-		LRK55_RS18875	0.56	-1.2
116,395	-		LRK55_RS18875	0.56	-0.6
116,395	-		LRK55_RS18875	0.56	-1.1
116,395	-		LRK55_RS18875	0.56	-0.6
116,476	+		LRK55_RS18875	0.81	-0.5
116,477	-		LRK55_RS18875	0.81	+0.3
116,477	-		LRK55_RS18875	0.81	-1.7
116,477	-		LRK55_RS18875	0.81	-0.4
116,477	-		LRK55_RS18875	0.81	-2.2
116,516	-				-1.5
116,516	-				+0.7
116,532	+				+0.0
116,532	+				+0.0
116,532	+				-0.9
116,532	+				+0.4
116,532	+				+1.1
116,533	-				+0.7
116,533	-				-0.6
116,533	-				+0.7
116,533	-				-0.5
116,533	-				-0.8
116,533	-				-0.0
116,533	-				+0.7
116,536	-				-2.8
116,538	+				-0.4
116,539	-				-0.5
116,539	-				-1.2
116,539	-				+0.5
116,539	-				-0.7
116,539	-				+1.4
116,598	+				-1.6
116,624	-				-0.8
116,624	-				-1.6
116,624	-				+0.5
116,624	-				+0.8
116,624	-				+0.3