Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS13230

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
2,948,088	+		LRK55_RS13225	0.53	+0.4
2,948,089	-		LRK55_RS13225	0.53	-0.1
2,948,203	-		LRK55_RS13225	0.61	+0.3
2,948,458	-		LRK55_RS13225	0.79	+0.1
2,948,458	-		LRK55_RS13225	0.79	-0.2
2,948,728	-				+1.0
2,948,728	-				+0.9
2,948,728	-				+0.5
2,949,215	+				-1.9
2,949,215	+				+1.1
2,949,216	-				-0.5
2,949,216	-				+1.6
2,949,330	+				+1.4
2,949,457	+				+0.7
2,949,457	+				+0.7
2,949,458	-				+0.2
2,949,469	+		LRK55_RS13235	0.10	-1.4
2,949,469	+		LRK55_RS13235	0.10	-0.2
2,949,469	+		LRK55_RS13235	0.10	+0.1
2,949,470	-		LRK55_RS13235	0.10	+0.1
2,949,470	-		LRK55_RS13235	0.10	+0.3
2,949,470	-		LRK55_RS13235	0.10	+0.8
2,949,535	+		LRK55_RS13235	0.14	-3.1
2,949,535	+		LRK55_RS13235	0.14	+0.4
2,949,850	+		LRK55_RS13235	0.33	+0.2
2,949,850	+		LRK55_RS13235	0.33	-0.3
2,949,851	-		LRK55_RS13235	0.33	-0.4
2,950,042	+		LRK55_RS13235	0.44	-0.5
2,950,042	+		LRK55_RS13235	0.44	+0.3
2,950,042	+		LRK55_RS13235	0.44	-0.8
2,950,042	+		LRK55_RS13235	0.44	+0.4
2,950,042	+		LRK55_RS13235	0.44	-0.7
2,950,042	+		LRK55_RS13235	0.44	-0.6
2,950,043	-		LRK55_RS13235	0.44	+0.9
2,950,043	-		LRK55_RS13235	0.44	+0.3
2,950,043	-		LRK55_RS13235	0.44	+1.1
2,950,043	-		LRK55_RS13235	0.44	-1.3
2,950,043	-		LRK55_RS13235	0.44	+0.2