Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS10725

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
2,362,833	+		LRK55_RS10720	0.40	+1.4
2,362,833	+		LRK55_RS10720	0.40	-0.8
2,362,834	-		LRK55_RS10720	0.40	-0.9
2,362,834	-		LRK55_RS10720	0.40	+0.8
2,362,834	-		LRK55_RS10720	0.40	-1.1
2,362,834	-		LRK55_RS10720	0.40	+1.9
2,362,834	-		LRK55_RS10720	0.40	-0.1
2,362,834	-		LRK55_RS10720	0.40	-0.9
2,362,920	+		LRK55_RS10720	0.53	+0.9
2,362,920	+		LRK55_RS10720	0.53	+2.9
2,362,920	+		LRK55_RS10720	0.53	-1.2
2,362,920	+		LRK55_RS10720	0.53	-0.6
2,362,920	+		LRK55_RS10720	0.53	+0.4
2,362,921	-		LRK55_RS10720	0.54	+1.0
2,362,921	-		LRK55_RS10720	0.54	-1.4
2,363,022	+		LRK55_RS10720	0.69	-2.9
2,363,022	+		LRK55_RS10720	0.69	+0.2
2,363,023	-		LRK55_RS10720	0.69	+1.2
2,363,023	-		LRK55_RS10720	0.69	-2.6
2,363,023	-		LRK55_RS10720	0.69	+0.5
2,363,231	-				+0.7
2,363,231	-				+1.0
2,363,277	-				+1.9
2,363,277	-				-1.0
2,363,418	+				+0.2
2,363,524	-		LRK55_RS10725	0.13	-0.7
2,363,524	-		LRK55_RS10725	0.13	-0.7
2,363,552	+		LRK55_RS10725	0.14	-2.7
2,363,580	+		LRK55_RS10725	0.16	-0.8
2,363,581	-		LRK55_RS10725	0.16	-1.3
2,363,628	+		LRK55_RS10725	0.19	-0.1
2,363,628	+		LRK55_RS10725	0.19	-0.4
2,363,628	+		LRK55_RS10725	0.19	+0.4
2,363,628	+		LRK55_RS10725	0.19	+0.8
2,363,628	+		LRK55_RS10725	0.19	+0.8
2,363,628	+		LRK55_RS10725	0.19	+0.4
2,363,628	+		LRK55_RS10725	0.19	+0.8
2,363,628	+		LRK55_RS10725	0.19	+1.2
2,363,629	-		LRK55_RS10725	0.19	-0.0
2,363,629	-		LRK55_RS10725	0.19	+0.2
2,363,629	-		LRK55_RS10725	0.19	+0.3
2,363,707	-		LRK55_RS10725	0.24	+0.7
2,363,707	-		LRK55_RS10725	0.24	+0.2
2,363,707	-		LRK55_RS10725	0.24	-1.0
2,363,727	+		LRK55_RS10725	0.25	+2.0
2,363,727	+		LRK55_RS10725	0.25	+0.4
2,363,727	+		LRK55_RS10725	0.25	+0.1
2,363,728	-		LRK55_RS10725	0.25	-0.6
2,363,728	-		LRK55_RS10725	0.25	-0.8
2,363,728	-		LRK55_RS10725	0.25	+1.0
2,363,728	-		LRK55_RS10725	0.25	-2.1
2,363,728	-		LRK55_RS10725	0.25	+0.2
2,363,728	-		LRK55_RS10725	0.25	-1.6
2,363,728	-		LRK55_RS10725	0.25	+1.0
2,363,790	+		LRK55_RS10725	0.29	+1.5
2,363,791	-		LRK55_RS10725	0.29	+1.5
2,363,791	-		LRK55_RS10725	0.29	+0.8
2,363,859	+		LRK55_RS10725	0.33	-1.4
2,363,860	-		LRK55_RS10725	0.33	+0.4
2,363,943	+		LRK55_RS10725	0.38	-0.6
2,363,943	+		LRK55_RS10725	0.38	+0.5
2,363,943	+		LRK55_RS10725	0.38	+1.2
2,363,943	+		LRK55_RS10725	0.38	+0.4
2,363,943	+		LRK55_RS10725	0.38	+1.7
2,363,943	+		LRK55_RS10725	0.38	-0.4
2,363,943	+		LRK55_RS10725	0.38	-0.8
2,363,943	+		LRK55_RS10725	0.38	+0.7
2,363,944	-		LRK55_RS10725	0.38	+0.4
2,363,944	-		LRK55_RS10725	0.38	+0.6
2,363,944	-		LRK55_RS10725	0.38	+0.2
2,363,944	-		LRK55_RS10725	0.38	+0.9
2,363,997	+		LRK55_RS10725	0.41	+0.8
2,363,997	+		LRK55_RS10725	0.41	+1.2
2,363,997	+		LRK55_RS10725	0.41	-0.4
2,363,998	-		LRK55_RS10725	0.41	-2.3
2,364,111	+		LRK55_RS10725	0.48	+0.7
2,364,111	+		LRK55_RS10725	0.48	-0.1
2,364,111	+		LRK55_RS10725	0.48	+1.0
2,364,112	-		LRK55_RS10725	0.48	-0.7
2,364,112	-		LRK55_RS10725	0.48	+2.0
2,364,112	-		LRK55_RS10725	0.48	-0.8
2,364,112	-		LRK55_RS10725	0.48	+0.1
2,364,356	-		LRK55_RS10725	0.63	+0.5
2,364,356	-		LRK55_RS10725	0.63	+0.6
2,364,372	+		LRK55_RS10725	0.64	-0.6
2,364,372	+		LRK55_RS10725	0.64	+1.3
2,364,372	+		LRK55_RS10725	0.64	+0.4
2,364,373	-		LRK55_RS10725	0.64	-1.4
2,364,373	-		LRK55_RS10725	0.64	-0.6
2,364,373	-		LRK55_RS10725	0.64	-0.6
2,364,373	-		LRK55_RS10725	0.64	-0.4
2,364,373	-		LRK55_RS10725	0.64	+0.3
2,364,373	-		LRK55_RS10725	0.64	-2.0
2,364,708	+		LRK55_RS10725	0.85	-0.4
2,364,708	+		LRK55_RS10725	0.85	+1.5
2,364,708	+		LRK55_RS10725	0.85	+0.0
2,364,708	+		LRK55_RS10725	0.85	-0.7
2,364,708	+		LRK55_RS10725	0.85	-1.2
2,364,708	+		LRK55_RS10725	0.85	-0.7
2,364,708	+		LRK55_RS10725	0.85	+1.1
2,364,709	-		LRK55_RS10725	0.85	+0.4
2,364,709	-		LRK55_RS10725	0.85	-0.1
2,364,709	-		LRK55_RS10725	0.85	+0.5
2,364,709	-		LRK55_RS10725	0.85	-1.2
2,364,709	-		LRK55_RS10725	0.85	+0.0
2,364,709	-		LRK55_RS10725	0.85	-1.2
2,364,798	+				+0.2
2,364,798	+				+0.2
2,364,798	+				+0.6
2,364,798	+				-0.2
2,364,799	-				+0.2
2,364,799	-				+0.5
2,364,799	-				+0.8
2,364,834	+				-0.2
2,365,012	+				+0.1
2,365,012	+				-1.1
2,365,013	-				+0.8
2,365,013	-				-1.2
2,365,013	-				-1.1
2,365,013	-				-1.3
2,365,013	-				+1.5
2,365,188	+		LRK55_RS10730	0.26	+0.6
2,365,188	+		LRK55_RS10730	0.26	-0.8
2,365,188	+		LRK55_RS10730	0.26	-1.0
2,365,188	+		LRK55_RS10730	0.26	+0.2
2,365,189	-		LRK55_RS10730	0.27	+0.6
2,365,189	-		LRK55_RS10730	0.27	+0.2
2,365,189	-		LRK55_RS10730	0.27	+2.0
2,365,189	-		LRK55_RS10730	0.27	-0.6
2,365,189	-		LRK55_RS10730	0.27	+1.2
2,365,399	+				+0.8
2,365,399	+				-0.2
2,365,399	+				+1.4
2,365,400	-				-0.2
2,365,400	-				+0.1
2,365,400	-				+1.2
2,365,400	-				+0.1
2,365,568	+		LRK55_RS10735	0.12	-1.2
2,365,568	+		LRK55_RS10735	0.12	-0.8
2,365,569	-		LRK55_RS10735	0.12	+1.1
2,365,569	-		LRK55_RS10735	0.12	+0.2
2,365,619	+		LRK55_RS10735	0.22	-0.4
2,365,619	+		LRK55_RS10735	0.22	+0.1
2,365,619	+		LRK55_RS10735	0.22	-0.1
2,365,619	+		LRK55_RS10735	0.22	-0.6
2,365,620	-		LRK55_RS10735	0.22	-0.1
2,365,620	-		LRK55_RS10735	0.22	-2.5
2,365,620	-		LRK55_RS10735	0.22	-0.3
2,365,718	+		LRK55_RS10735	0.42	-0.6
2,365,718	+		LRK55_RS10735	0.42	-0.4
2,365,719	-		LRK55_RS10735	0.42	+1.6
2,365,719	-		LRK55_RS10735	0.42	+1.1
2,365,719	-		LRK55_RS10735	0.42	+0.9
2,365,719	-		LRK55_RS10735	0.42	+1.2
2,365,745	+		LRK55_RS10735	0.47	-2.4
2,365,745	+		LRK55_RS10735	0.47	+0.1
2,365,745	+		LRK55_RS10735	0.47	-2.0
2,365,745	+		LRK55_RS10735	0.47	-0.6
2,365,745	+		LRK55_RS10735	0.47	-0.7
2,365,745	+		LRK55_RS10735	0.47	+0.6
2,365,746	-		LRK55_RS10735	0.47	+0.5
2,365,746	-		LRK55_RS10735	0.47	+0.7
2,365,746	-		LRK55_RS10735	0.47	+0.4
2,365,746	-		LRK55_RS10735	0.47	-0.2