Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS07765

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
1,708,248	+		LRK55_RS07760	0.23	+0.4
1,708,248	+		LRK55_RS07760	0.23	-0.4
1,708,249	-		LRK55_RS07760	0.23	+0.3
1,708,249	-		LRK55_RS07760	0.23	+1.0
1,708,249	-		LRK55_RS07760	0.23	+0.0
1,708,249	-		LRK55_RS07760	0.23	-0.1
1,708,419	+		LRK55_RS07760	0.37	-0.3
1,708,419	+		LRK55_RS07760	0.37	-1.1
1,708,419	+		LRK55_RS07760	0.37	-0.7
1,708,420	-		LRK55_RS07760	0.37	+0.9
1,708,542	+		LRK55_RS07760	0.47	+0.3
1,708,542	+		LRK55_RS07760	0.47	-1.2
1,708,542	+		LRK55_RS07760	0.47	+0.4
1,708,542	+		LRK55_RS07760	0.47	+0.3
1,708,543	-		LRK55_RS07760	0.47	-0.2
1,708,710	+		LRK55_RS07760	0.60	-0.5
1,708,710	+		LRK55_RS07760	0.60	-1.9
1,708,710	+		LRK55_RS07760	0.60	+0.4
1,708,710	+		LRK55_RS07760	0.60	+0.9
1,708,710	+		LRK55_RS07760	0.60	+0.1
1,709,057	-		LRK55_RS07760	0.89	-1.6
1,709,057	-		LRK55_RS07760	0.89	-0.2
1,709,345	+		LRK55_RS07765	0.12	-1.3
1,709,345	+		LRK55_RS07765	0.12	+0.7
1,709,345	+		LRK55_RS07765	0.12	+0.7
1,709,345	+		LRK55_RS07765	0.12	-0.4
1,709,346	-		LRK55_RS07765	0.13	+0.1
1,709,346	-		LRK55_RS07765	0.13	-0.0
1,709,360	+		LRK55_RS07765	0.14	+1.1
1,709,361	-		LRK55_RS07765	0.14	-0.0
1,709,361	-		LRK55_RS07765	0.14	+0.6
1,709,361	-		LRK55_RS07765	0.14	+2.0
1,709,411	+		LRK55_RS07765	0.21	-0.3
1,709,412	-		LRK55_RS07765	0.21	-0.7
1,709,516	+		LRK55_RS07765	0.34	-0.2
1,709,516	+		LRK55_RS07765	0.34	-0.7
1,709,516	+		LRK55_RS07765	0.34	+0.3
1,709,516	+		LRK55_RS07765	0.34	+0.7
1,709,517	-		LRK55_RS07765	0.34	-0.3
1,709,517	-		LRK55_RS07765	0.34	+0.4
1,709,517	-		LRK55_RS07765	0.34	+0.1
1,709,517	-		LRK55_RS07765	0.34	-0.4
1,709,517	-		LRK55_RS07765	0.34	-0.4
1,709,793	-		LRK55_RS07765	0.70	-0.7
1,709,882	+		LRK55_RS07765	0.81	-0.4
1,710,016	-				+0.3
1,710,016	-				-1.0
1,710,016	-				-0.0
1,710,021	+				+0.4
1,710,022	-				-1.5
1,710,164	+				-0.2
1,710,164	+				+1.0
1,710,164	+				+1.0
1,710,164	+				+0.5
1,710,164	+				+0.5
1,710,165	-				-0.6
1,710,165	-				-0.7
1,710,165	-				-0.3
1,710,165	-				+0.0
1,710,165	-				-0.7
1,710,165	-				+1.3
1,710,172	-				-0.9
1,710,185	+				-0.4
1,710,220	+				-0.9
1,710,221	-				-0.1
1,710,221	-				+1.0
1,710,221	-				-0.5
1,710,406	-				+0.2
1,710,465	+		LRK55_RS07770	0.11	+0.4
1,710,465	+		LRK55_RS07770	0.11	-0.2
1,710,465	+		LRK55_RS07770	0.11	-0.5
1,710,466	-		LRK55_RS07770	0.11	+0.3
1,710,466	-		LRK55_RS07770	0.11	+0.2
1,710,466	-		LRK55_RS07770	0.11	-0.6
1,710,466	-		LRK55_RS07770	0.11	+0.3
1,710,529	+		LRK55_RS07770	0.15	-0.8
1,710,529	+		LRK55_RS07770	0.15	+0.7
1,710,530	-		LRK55_RS07770	0.15	+0.1
1,710,733	-		LRK55_RS07770	0.29	+1.6
1,710,964	-		LRK55_RS07770	0.45	+0.2
1,710,964	-		LRK55_RS07770	0.45	-0.0