Strain Fitness in Rhodanobacter denitrificans MT42 around LRK55_RS00550

Experiment: R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A_PIPES with Manganese (II) chloride tetrahydrate 1 mM
120,740	+		LRK55_RS00545	0.42	+0.1
120,740	+		LRK55_RS00545	0.42	+0.7
120,740	+		LRK55_RS00545	0.42	-0.3
120,740	+		LRK55_RS00545	0.42	-0.0
120,740	+		LRK55_RS00545	0.42	-0.1
120,740	+		LRK55_RS00545	0.42	+0.9
120,741	-		LRK55_RS00545	0.42	+0.2
120,741	-		LRK55_RS00545	0.42	+0.3
120,741	-		LRK55_RS00545	0.42	+1.3
120,741	-		LRK55_RS00545	0.42	-1.3
120,741	-		LRK55_RS00545	0.42	+0.8
120,785	+		LRK55_RS00545	0.45	+0.5
120,786	-		LRK55_RS00545	0.45	+0.6
120,917	+		LRK55_RS00545	0.55	+1.1
121,142	+		LRK55_RS00545	0.71	+1.5
121,463	+				-0.1
121,463	+				-0.7
121,463	+				-4.8
121,463	+				+1.4
121,463	+				+0.7
121,463	+				+0.3
121,463	+				-1.0
121,464	-				+0.3
121,464	-				-0.2
121,464	-				-1.3
121,464	-				+0.0
121,464	-				-0.8
121,464	-				+0.4
121,464	-				+0.0
121,527	-				+0.6
121,545	+				-0.7
121,545	+				-0.2
121,545	+				-1.8
121,545	+				+0.7
121,545	+				+0.0
121,545	+				-1.2
121,545	+				-0.2
121,545	+				-0.2
121,546	-				-0.7
121,546	-				+1.5
121,546	-				-0.3
121,546	-				-1.3
121,546	-				+0.1
121,546	-				-1.3
121,546	-				-1.1
121,546	-				+0.5
121,546	-				-0.4
121,547	+				+1.5
121,547	+				+0.8
121,547	+				-0.5
121,547	+				-1.0
121,548	-				-0.5
121,548	-				+0.7
121,548	-				-0.7
121,548	-				+1.9
121,548	-				-1.5
121,548	-				+1.3
121,548	-				-0.3
121,548	-				+0.2
121,548	-				-0.3
121,635	+				+0.2
121,635	+				-0.8
121,635	+				+1.9
121,636	-				-1.1
121,636	-				-0.9
121,636	-				+0.9
121,637	+				+0.9
121,638	-				-0.8
121,638	-				-2.3
121,638	-				-0.1
121,638	-				-3.4
122,132	+		LRK55_RS00550	0.24	-2.4
122,132	+		LRK55_RS00550	0.24	-0.1
122,132	+		LRK55_RS00550	0.24	-0.1
122,132	+		LRK55_RS00550	0.24	-1.4
122,132	+		LRK55_RS00550	0.24	-0.1
122,133	-		LRK55_RS00550	0.24	-0.7
122,133	-		LRK55_RS00550	0.24	-3.0
122,133	-		LRK55_RS00550	0.24	-1.4
122,133	-		LRK55_RS00550	0.24	-1.7
122,133	-		LRK55_RS00550	0.24	-2.4
122,133	-		LRK55_RS00550	0.24	-0.6
122,133	-		LRK55_RS00550	0.24	-1.2
122,133	-		LRK55_RS00550	0.24	-0.9
122,133	-		LRK55_RS00550	0.24	-2.3
122,191	+		LRK55_RS00550	0.27	-0.7
122,191	+		LRK55_RS00550	0.27	-1.0
122,191	+		LRK55_RS00550	0.27	-2.8
122,191	+		LRK55_RS00550	0.27	-0.4
122,191	+		LRK55_RS00550	0.27	-1.4
122,191	+		LRK55_RS00550	0.27	-1.3
122,192	-		LRK55_RS00550	0.27	-2.1
122,192	-		LRK55_RS00550	0.27	-0.7
122,192	-		LRK55_RS00550	0.27	-0.1
122,192	-		LRK55_RS00550	0.27	-2.4
122,192	-		LRK55_RS00550	0.27	-1.7
122,260	+		LRK55_RS00550	0.31	+0.3
122,260	+		LRK55_RS00550	0.31	-2.1
122,260	+		LRK55_RS00550	0.31	-1.0
122,260	+		LRK55_RS00550	0.31	+0.8
122,260	+		LRK55_RS00550	0.31	-2.1
122,260	+		LRK55_RS00550	0.31	-2.7
122,261	-		LRK55_RS00550	0.31	-0.7
122,261	-		LRK55_RS00550	0.31	-2.9
122,261	-		LRK55_RS00550	0.31	-0.4
122,261	-		LRK55_RS00550	0.31	-0.7
122,341	+		LRK55_RS00550	0.35	-0.7
122,341	+		LRK55_RS00550	0.35	-2.4
122,341	+		LRK55_RS00550	0.35	-2.4
122,341	+		LRK55_RS00550	0.35	-0.7
122,342	-		LRK55_RS00550	0.35	+1.2
122,342	-		LRK55_RS00550	0.35	-2.1
122,342	-		LRK55_RS00550	0.35	-2.5
122,342	-		LRK55_RS00550	0.35	-1.4
122,342	-		LRK55_RS00550	0.35	+0.9
122,845	+		LRK55_RS00550	0.63	-3.2
122,845	+		LRK55_RS00550	0.63	-2.9
122,846	-		LRK55_RS00550	0.63	-0.7
123,034	+		LRK55_RS00550	0.73	-1.4
123,034	+		LRK55_RS00550	0.73	-1.4
123,034	+		LRK55_RS00550	0.73	-1.7
123,034	+		LRK55_RS00550	0.73	-1.1
123,034	+		LRK55_RS00550	0.73	-2.1
123,034	+		LRK55_RS00550	0.73	-1.4
123,034	+		LRK55_RS00550	0.73	-0.4
123,034	+		LRK55_RS00550	0.73	-3.1
123,034	+		LRK55_RS00550	0.73	-2.4
123,034	+		LRK55_RS00550	0.73	-0.7
123,034	+		LRK55_RS00550	0.73	-1.7
123,034	+		LRK55_RS00550	0.73	-2.1
123,035	-		LRK55_RS00550	0.73	-0.7
123,035	-		LRK55_RS00550	0.73	-3.0
123,035	-		LRK55_RS00550	0.73	-2.3
123,035	-		LRK55_RS00550	0.73	-0.4
123,035	-		LRK55_RS00550	0.73	-0.5
123,035	-		LRK55_RS00550	0.73	-1.6
123,035	-		LRK55_RS00550	0.73	-1.4
123,035	-		LRK55_RS00550	0.73	-3.1
123,035	-		LRK55_RS00550	0.73	-2.3
123,035	-		LRK55_RS00550	0.73	+0.2
123,035	-		LRK55_RS00550	0.73	-0.4
123,035	-		LRK55_RS00550	0.73	-1.4
123,035	-		LRK55_RS00550	0.73	-0.7
123,128	-		LRK55_RS00550	0.78	-1.9
123,209	-		LRK55_RS00550	0.83	-1.9
123,268	+		LRK55_RS00550	0.86	-0.2
123,268	+		LRK55_RS00550	0.86	-1.4
123,268	+		LRK55_RS00550	0.86	-0.1
123,268	+		LRK55_RS00550	0.86	-1.9
123,268	+		LRK55_RS00550	0.86	-0.1
123,268	+		LRK55_RS00550	0.86	-2.4
123,268	+		LRK55_RS00550	0.86	-1.7
123,268	+		LRK55_RS00550	0.86	-2.8
123,268	+		LRK55_RS00550	0.86	-1.1
123,268	+		LRK55_RS00550	0.86	-1.1
123,268	+		LRK55_RS00550	0.86	-0.1
123,269	-		LRK55_RS00550	0.86	-2.4
123,269	-		LRK55_RS00550	0.86	-2.4
123,269	-		LRK55_RS00550	0.86	-2.8
123,269	-		LRK55_RS00550	0.86	-3.0
123,269	-		LRK55_RS00550	0.86	-0.7
123,269	-		LRK55_RS00550	0.86	-1.4
123,705	+		LRK55_RS00555	0.13	-0.5
123,705	+		LRK55_RS00555	0.13	+0.2
123,705	+		LRK55_RS00555	0.13	-1.5
123,706	-		LRK55_RS00555	0.13	-1.7
123,706	-		LRK55_RS00555	0.13	-0.5
124,186	-		LRK55_RS00555	0.64	+0.9
124,460	+				-0.9
124,460	+				-0.7
124,460	+				-0.7
124,460	+				+0.0
124,460	+				+0.9
124,460	+				+0.6
124,460	+				-0.1
124,460	+				-2.1
124,460	+				-0.2
124,460	+				-0.4
124,460	+				-0.6
124,461	-				-1.9
124,461	-				-0.2
124,461	-				-1.4
124,461	-				-0.6
124,461	-				-3.0
124,461	-				-0.3
124,461	-				-0.7
124,461	-				-0.2
124,461	-				-1.5
124,461	-				+0.6