Strain Fitness in Enterobacter sp. TBS_079 around MPMX20_04641

Experiment: Outgrowth from agar plate co-culture with Enterobacter sp. TBS_079

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX20_04640 and MPMX20_04641 overlap by 1 nucleotidesMPMX20_04641 and MPMX20_04642 are separated by 47 nucleotidesMPMX20_04642 and MPMX20_04643 are separated by 14 nucleotides MPMX20_04640: MPMX20_04640 - Phosphate transport system permease protein PstC, at 4,860,963 to 4,861,922 _04640 MPMX20_04641: MPMX20_04641 - Phosphate transport system permease protein PstA, at 4,861,922 to 4,862,812 _04641 MPMX20_04642: MPMX20_04642 - Phosphate import ATP-binding protein PstB, at 4,862,860 to 4,863,633 _04642 MPMX20_04643: MPMX20_04643 - Phosphate-specific transport system accessory protein PhoU, at 4,863,648 to 4,864,373 _04643 Position (kb) 4861 4862 4863Strain fitness (log2 ratio) -2 -1 0 1 2at 4861.163 kb on + strand, within MPMX20_04640at 4861.163 kb on + strand, within MPMX20_04640at 4861.254 kb on - strand, within MPMX20_04640at 4861.298 kb on + strand, within MPMX20_04640at 4861.364 kb on - strand, within MPMX20_04640at 4861.724 kb on + strand, within MPMX20_04640at 4861.834 kb on + strandat 4861.880 kb on + strandat 4861.950 kb on - strandat 4862.009 kb on + strandat 4862.020 kb on + strand, within MPMX20_04641at 4862.047 kb on + strand, within MPMX20_04641at 4862.047 kb on + strand, within MPMX20_04641at 4862.047 kb on + strand, within MPMX20_04641at 4862.055 kb on - strand, within MPMX20_04641at 4862.055 kb on - strand, within MPMX20_04641at 4862.263 kb on + strand, within MPMX20_04641at 4862.435 kb on + strand, within MPMX20_04641at 4862.435 kb on + strand, within MPMX20_04641at 4862.629 kb on + strand, within MPMX20_04641at 4862.637 kb on - strand, within MPMX20_04641at 4862.727 kb on + strandat 4862.735 kb on + strandat 4862.742 kb on + strandat 4862.742 kb on + strandat 4862.742 kb on + strandat 4862.742 kb on + strandat 4862.742 kb on + strandat 4862.805 kb on - strandat 4863.047 kb on + strand, within MPMX20_04642at 4863.047 kb on + strand, within MPMX20_04642at 4863.055 kb on - strand, within MPMX20_04642at 4863.055 kb on - strand, within MPMX20_04642at 4863.055 kb on - strand, within MPMX20_04642at 4863.055 kb on - strand, within MPMX20_04642at 4863.264 kb on - strand, within MPMX20_04642at 4863.414 kb on - strand, within MPMX20_04642at 4863.686 kb on + strandat 4863.686 kb on + strandat 4863.686 kb on + strandat 4863.686 kb on + strandat 4863.686 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Outgrowth from agar plate co-culture with Enterobacter sp. TBS_079
remove
4,861,163 + MPMX20_04640 0.21 -1.5
4,861,163 + MPMX20_04640 0.21 -1.6
4,861,254 - MPMX20_04640 0.30 -0.7
4,861,298 + MPMX20_04640 0.35 -0.5
4,861,364 - MPMX20_04640 0.42 -0.1
4,861,724 + MPMX20_04640 0.79 -2.1
4,861,834 + -1.1
4,861,880 + -0.1
4,861,950 - -0.1
4,862,009 + -0.7
4,862,020 + MPMX20_04641 0.11 -1.7
4,862,047 + MPMX20_04641 0.14 -0.7
4,862,047 + MPMX20_04641 0.14 +0.3
4,862,047 + MPMX20_04641 0.14 +1.3
4,862,055 - MPMX20_04641 0.15 -0.5
4,862,055 - MPMX20_04641 0.15 +0.7
4,862,263 + MPMX20_04641 0.38 -0.6
4,862,435 + MPMX20_04641 0.58 -1.5
4,862,435 + MPMX20_04641 0.58 -0.3
4,862,629 + MPMX20_04641 0.79 -1.8
4,862,637 - MPMX20_04641 0.80 +1.3
4,862,727 + -0.1
4,862,735 + -2.2
4,862,742 + -0.7
4,862,742 + -0.6
4,862,742 + +0.6
4,862,742 + +0.1
4,862,742 + -0.3
4,862,805 - -0.4
4,863,047 + MPMX20_04642 0.24 +1.3
4,863,047 + MPMX20_04642 0.24 -0.5
4,863,055 - MPMX20_04642 0.25 -1.1
4,863,055 - MPMX20_04642 0.25 -1.3
4,863,055 - MPMX20_04642 0.25 -0.5
4,863,055 - MPMX20_04642 0.25 -0.7
4,863,264 - MPMX20_04642 0.52 -0.3
4,863,414 - MPMX20_04642 0.72 -0.3
4,863,686 + +2.3
4,863,686 + -0.7
4,863,686 + -0.3
4,863,686 + +0.3
4,863,686 + -0.5

Or see this region's nucleotide sequence